A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.4
nTPM
Monaco:
131.1
nTPM
Schmiedel:
81.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.4
HPA sample
nTPM
Memory B-cell nTPM: 8.4
Samples: 6
Max nTPM: 10.9
Min nTPM: 5.9
P10809_1017
10.9
P10809_1025
7.1
P10809_1044
5.9
P10809_1063
7.5
P10809_1092
8.7
P10809_1105
10.1
Naive B-cell nTPM: 5.4
Samples: 6
Max nTPM: 7.1
Min nTPM: 4.3
P10809_1011
4.3
P10809_1029
5.5
P10809_1048
7.1
P10809_1067
4.4
P10809_1091
4.7
P10809_1104
6.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 97.5
Samples: 4
Max nTPM: 135.0
Min nTPM: 69.9
RHH5310_R3677
69.9
RHH5218_R3590
135.0
RHH5247_R3619
88.6
RHH5276_R3648
96.3
Naive B-cell nTPM: 84.0
Samples: 4
Max nTPM: 109.6
Min nTPM: 61.8
RHH5308_R3675
73.5
RHH5216_R3588
61.8
RHH5245_R3617
109.6
RHH5274_R3646
91.2
Non-switched memory B-cell nTPM: 93.0
Samples: 4
Max nTPM: 112.1
Min nTPM: 75.4
RHH5309_R3676
75.4
RHH5217_R3589
106.5
RHH5246_R3618
78.1
RHH5275_R3647
112.1
Plasmablast nTPM: 34.2
Samples: 4
Max nTPM: 36.1
Min nTPM: 30.9
RHH5312_R3679
34.5
RHH5220_R3592
36.1
RHH5249_R3621
30.9
RHH5278_R3650
35.1
Switched memory B-cell nTPM: 131.1
Samples: 4
Max nTPM: 208.5
Min nTPM: 88.4
RHH5311_R3678
88.4
RHH5219_R3591
110.3
RHH5248_R3620
208.5
RHH5277_R3649
117.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.1
Schmiedel sample id
TPM
Naive B-cell TPM: 81.1
Samples: 91
Max TPM: 148.8
Min TPM: 44.8
B_CELL_NAIVE_1
148.8
B_CELL_NAIVE_2
145.8
B_CELL_NAIVE_3
135.9
B_CELL_NAIVE_4
128.8
B_CELL_NAIVE_5
116.6
B_CELL_NAIVE_6
109.8
B_CELL_NAIVE_7
106.8
B_CELL_NAIVE_8
105.0
B_CELL_NAIVE_9
104.5
B_CELL_NAIVE_10
101.7
B_CELL_NAIVE_11
100.4
B_CELL_NAIVE_12
97.4
B_CELL_NAIVE_13
96.6
B_CELL_NAIVE_14
95.2
B_CELL_NAIVE_15
94.2
B_CELL_NAIVE_16
93.4
B_CELL_NAIVE_17
92.7
B_CELL_NAIVE_18
92.4
B_CELL_NAIVE_19
91.9
B_CELL_NAIVE_20
91.2
B_CELL_NAIVE_21
90.6
B_CELL_NAIVE_22
89.6
B_CELL_NAIVE_23
87.8
B_CELL_NAIVE_24
87.7
B_CELL_NAIVE_25
87.7
B_CELL_NAIVE_26
87.5
B_CELL_NAIVE_27
86.5
B_CELL_NAIVE_28
86.2
B_CELL_NAIVE_29
86.2
B_CELL_NAIVE_30
85.4
B_CELL_NAIVE_31
85.4
B_CELL_NAIVE_32
84.0
B_CELL_NAIVE_33
83.2
B_CELL_NAIVE_34
82.9
B_CELL_NAIVE_35
82.2
B_CELL_NAIVE_36
81.9
B_CELL_NAIVE_37
81.5
B_CELL_NAIVE_38
80.6
B_CELL_NAIVE_39
80.6
B_CELL_NAIVE_40
79.7
B_CELL_NAIVE_41
79.3
B_CELL_NAIVE_42
78.4
B_CELL_NAIVE_43
78.1
B_CELL_NAIVE_44
78.0
B_CELL_NAIVE_45
77.9
B_CELL_NAIVE_46
77.5
B_CELL_NAIVE_47
77.4
B_CELL_NAIVE_48
77.3
B_CELL_NAIVE_49
77.2
B_CELL_NAIVE_50
77.1
B_CELL_NAIVE_51
77.0
B_CELL_NAIVE_52
76.6
B_CELL_NAIVE_53
76.5
B_CELL_NAIVE_54
76.4
B_CELL_NAIVE_55
76.2
B_CELL_NAIVE_56
76.2
B_CELL_NAIVE_57
76.1
B_CELL_NAIVE_58
74.4
B_CELL_NAIVE_59
74.4
B_CELL_NAIVE_60
72.8
B_CELL_NAIVE_61
72.5
B_CELL_NAIVE_62
72.3
B_CELL_NAIVE_63
72.2
B_CELL_NAIVE_64
71.7
B_CELL_NAIVE_65
71.6
B_CELL_NAIVE_66
71.3
B_CELL_NAIVE_67
71.2
B_CELL_NAIVE_68
71.0
B_CELL_NAIVE_69
70.9
B_CELL_NAIVE_70
69.7
B_CELL_NAIVE_71
69.2
B_CELL_NAIVE_72
69.0
B_CELL_NAIVE_73
68.4
B_CELL_NAIVE_74
67.7
B_CELL_NAIVE_75
66.9
B_CELL_NAIVE_76
65.5
B_CELL_NAIVE_77
65.0
B_CELL_NAIVE_78
63.8
B_CELL_NAIVE_79
62.9
B_CELL_NAIVE_80
62.5
B_CELL_NAIVE_81
62.1
B_CELL_NAIVE_82
61.9
B_CELL_NAIVE_83
60.7
B_CELL_NAIVE_84
60.4
B_CELL_NAIVE_85
59.6
B_CELL_NAIVE_86
57.4
B_CELL_NAIVE_87
57.3
B_CELL_NAIVE_88
57.0
B_CELL_NAIVE_89
53.2
B_CELL_NAIVE_90
52.1
B_CELL_NAIVE_91
44.8
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The Human Protein Atlas project is funded
