A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.7
nTPM
Monaco:
164.7
nTPM
Schmiedel:
120.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
HPA sample
nTPM
Classical monocyte nTPM: 2.8
Samples: 6
Max nTPM: 3.3
Min nTPM: 1.8
P10809_1003
2.9
P10809_1020
3.3
P10809_1039
3.0
P10809_1058
2.5
P10809_1080
3.0
P10809_1107
1.8
Intermediate monocyte nTPM: 11.8
Samples: 6
Max nTPM: 16.8
Min nTPM: 8.9
P10809_1004
16.8
P10809_1023
9.3
P10809_1042
8.9
P10809_1061
16.7
P10809_1081
9.3
P10809_1108
9.9
Non-classical monocyte nTPM: 25.7
Samples: 5
Max nTPM: 45.8
Min nTPM: 13.1
P10809_1005
29.2
P10809_1053
20.6
P10809_1072
45.8
P10809_1082
19.8
P10809_1109
13.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.7
Monaco sample
nTPM
Classical monocyte nTPM: 30.6
Samples: 4
Max nTPM: 35.2
Min nTPM: 26.9
RHH5313_R3680
32.8
RHH5221_R3593
27.4
RHH5250_R3622
35.2
RHH5279_R3651
26.9
Intermediate monocyte nTPM: 116.5
Samples: 4
Max nTPM: 138.3
Min nTPM: 96.8
RHH5314_R3681
100.4
RHH5222_R3594
130.6
RHH5251_R3623
138.3
RHH5280_R3652
96.8
Non-classical monocyte nTPM: 164.7
Samples: 4
Max nTPM: 183.9
Min nTPM: 135.8
RHH5315_R3682
135.8
RHH5223_R3595
183.9
RHH5252_R3624
165.2
RHH5281_R3653
173.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.2
Schmiedel sample id
TPM
Classical monocyte TPM: 15.6
Samples: 91
Max TPM: 22.3
Min TPM: 12.2
MONOCYTES_1
22.3
MONOCYTES_2
20.8
MONOCYTES_3
20.6
MONOCYTES_4
20.5
MONOCYTES_5
19.3
MONOCYTES_6
19.1
MONOCYTES_7
18.9
MONOCYTES_8
18.6
MONOCYTES_9
18.4
MONOCYTES_10
18.4
MONOCYTES_11
18.3
MONOCYTES_12
18.1
MONOCYTES_13
18.1
MONOCYTES_14
17.9
MONOCYTES_15
17.8
MONOCYTES_16
17.8
MONOCYTES_17
17.4
MONOCYTES_18
17.2
MONOCYTES_19
17.2
MONOCYTES_20
17.1
MONOCYTES_21
17.0
MONOCYTES_22
16.8
MONOCYTES_23
16.8
MONOCYTES_24
16.8
MONOCYTES_25
16.7
MONOCYTES_26
16.7
MONOCYTES_27
16.7
MONOCYTES_28
16.7
MONOCYTES_29
16.4
MONOCYTES_30
16.4
MONOCYTES_31
16.4
MONOCYTES_32
16.2
MONOCYTES_33
16.1
MONOCYTES_34
16.1
MONOCYTES_35
16.1
MONOCYTES_36
16.0
MONOCYTES_37
16.0
MONOCYTES_38
15.9
MONOCYTES_39
15.9
MONOCYTES_40
15.9
MONOCYTES_41
15.8
MONOCYTES_42
15.6
MONOCYTES_43
15.6
MONOCYTES_44
15.6
MONOCYTES_45
15.6
MONOCYTES_46
15.5
MONOCYTES_47
15.5
MONOCYTES_48
15.4
MONOCYTES_49
15.3
MONOCYTES_50
15.3
MONOCYTES_51
15.2
MONOCYTES_52
15.2
MONOCYTES_53
15.1
MONOCYTES_54
14.9
MONOCYTES_55
14.9
MONOCYTES_56
14.8
MONOCYTES_57
14.8
MONOCYTES_58
14.6
MONOCYTES_59
14.5
MONOCYTES_60
14.4
MONOCYTES_61
14.3
MONOCYTES_62
14.2
MONOCYTES_63
14.1
MONOCYTES_64
14.1
MONOCYTES_65
14.1
MONOCYTES_66
13.9
MONOCYTES_67
13.8
MONOCYTES_68
13.8
MONOCYTES_69
13.7
MONOCYTES_70
13.6
MONOCYTES_71
13.6
MONOCYTES_72
13.6
MONOCYTES_73
13.4
MONOCYTES_74
13.4
MONOCYTES_75
13.3
MONOCYTES_76
13.2
MONOCYTES_77
13.1
MONOCYTES_78
13.1
MONOCYTES_79
13.1
MONOCYTES_80
13.1
MONOCYTES_81
13.0
MONOCYTES_82
13.0
MONOCYTES_83
13.0
MONOCYTES_84
13.0
MONOCYTES_85
12.9
MONOCYTES_86
12.9
MONOCYTES_87
12.8
MONOCYTES_88
12.5
MONOCYTES_89
12.4
MONOCYTES_90
12.3
MONOCYTES_91
12.2
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Non-classical monocyte TPM: 120.2
Samples: 90
Max TPM: 188.3
Min TPM: 68.1
M2_1
188.3
M2_2
176.2
M2_3
165.7
M2_4
164.7
M2_5
164.0
M2_6
160.8
M2_7
159.9
M2_8
156.3
M2_9
149.5
M2_10
147.4
M2_11
146.2
M2_12
143.8
M2_13
142.8
M2_14
142.0
M2_15
139.0
M2_16
137.7
M2_17
136.8
M2_18
135.5
M2_19
135.5
M2_20
133.5
M2_21
133.2
M2_22
133.0
M2_23
131.3
M2_24
130.5
M2_25
130.0
M2_26
129.4
M2_27
128.6
M2_28
128.1
M2_29
126.6
M2_30
126.4
M2_31
126.4
M2_32
124.9
M2_33
123.6
M2_34
123.6
M2_35
123.1
M2_36
122.4
M2_37
121.9
M2_38
121.7
M2_39
120.5
M2_40
120.5
M2_41
120.4
M2_42
120.3
M2_43
119.7
M2_44
118.6
M2_45
117.6
M2_46
117.1
M2_47
116.7
M2_48
116.5
M2_49
116.3
M2_50
116.2
M2_51
115.7
M2_52
115.1
M2_53
114.8
M2_54
114.3
M2_55
112.3
M2_56
112.0
M2_57
111.8
M2_58
111.7
M2_59
111.5
M2_60
110.7
M2_61
109.7
M2_62
109.6
M2_63
109.0
M2_64
108.3
M2_65
107.7
M2_66
107.2
M2_67
107.1
M2_68
106.8
M2_69
104.5
M2_70
104.1
M2_71
103.9
M2_72
103.9
M2_73
103.7
M2_74
103.5
M2_75
102.5
M2_76
100.2
M2_77
99.0
M2_78
98.7
M2_79
98.2
M2_80
97.1
M2_81
96.8
M2_82
96.7
M2_83
96.7
M2_84
91.7
M2_85
88.1
M2_86
86.6
M2_87
85.9
M2_88
82.0
M2_89
75.9
M2_90
68.1
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