A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
14.1
nTPM
Schmiedel:
77.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
NK-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1013
0.4
P10809_1033
1.0
P10809_1052
0.3
P10809_1071
0.0
P10809_1093
1.1
P10809_1103
0.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Monaco sample
nTPM
NK-cell nTPM: 14.1
Samples: 4
Max nTPM: 15.8
Min nTPM: 11.5
RHH5316_R3683
11.5
RHH5224_R3596
14.8
RHH5253_R3625
15.8
RHH5282_R3654
14.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.7
Schmiedel sample id
TPM
NK-cell TPM: 77.7
Samples: 90
Max TPM: 98.8
Min TPM: 52.9
NK_1
98.8
NK_2
95.8
NK_3
93.0
NK_4
92.7
NK_5
91.7
NK_6
91.5
NK_7
91.0
NK_8
90.8
NK_9
90.4
NK_10
90.4
NK_11
90.3
NK_12
89.7
NK_13
89.1
NK_14
88.9
NK_15
88.5
NK_16
86.7
NK_17
86.6
NK_18
86.0
NK_19
85.8
NK_20
84.8
NK_21
84.6
NK_22
84.1
NK_23
83.8
NK_24
83.6
NK_25
83.4
NK_26
83.4
NK_27
83.0
NK_28
82.7
NK_29
82.6
NK_30
82.2
NK_31
81.9
NK_32
81.8
NK_33
81.6
NK_34
81.3
NK_35
81.3
NK_36
81.0
NK_37
80.7
NK_38
80.6
NK_39
80.5
NK_40
79.6
NK_41
79.5
NK_42
79.2
NK_43
78.5
NK_44
77.7
NK_45
77.5
NK_46
77.1
NK_47
77.0
NK_48
76.9
NK_49
76.8
NK_50
76.3
NK_51
75.5
NK_52
75.3
NK_53
75.2
NK_54
75.1
NK_55
75.0
NK_56
74.8
NK_57
74.4
NK_58
74.1
NK_59
73.6
NK_60
73.6
NK_61
73.6
NK_62
73.0
NK_63
72.5
NK_64
72.3
NK_65
72.2
NK_66
72.0
NK_67
71.8
NK_68
71.8
NK_69
71.4
NK_70
71.3
NK_71
70.2
NK_72
70.1
NK_73
69.6
NK_74
69.2
NK_75
68.8
NK_76
68.2
NK_77
68.1
NK_78
67.3
NK_79
65.9
NK_80
65.2
NK_81
65.1
NK_82
64.8
NK_83
64.5
NK_84
64.5
NK_85
63.4
NK_86
62.4
NK_87
60.2
NK_88
59.9
NK_89
57.0
NK_90
52.9
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