A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
11.8
nTPM
Schmiedel:
42.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Classical monocyte nTPM: 0.7
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.4
P10809_1003
0.4
P10809_1020
0.6
P10809_1039
0.9
P10809_1058
0.7
P10809_1080
0.7
P10809_1107
0.7
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.3
P10809_1004
0.7
P10809_1023
0.4
P10809_1042
0.7
P10809_1061
0.3
P10809_1081
0.7
P10809_1108
1.3
Non-classical monocyte nTPM: 0.6
Samples: 5
Max nTPM: 1.2
Min nTPM: 0.0
P10809_1005
1.2
P10809_1053
0.5
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.8
Monaco sample
nTPM
Classical monocyte nTPM: 10.7
Samples: 4
Max nTPM: 12.7
Min nTPM: 9.5
RHH5313_R3680
9.9
RHH5221_R3593
10.7
RHH5250_R3622
12.7
RHH5279_R3651
9.5
Intermediate monocyte nTPM: 10.7
Samples: 4
Max nTPM: 13.0
Min nTPM: 8.4
RHH5314_R3681
8.4
RHH5222_R3594
13.0
RHH5251_R3623
12.1
RHH5280_R3652
9.1
Non-classical monocyte nTPM: 11.8
Samples: 4
Max nTPM: 13.6
Min nTPM: 8.7
RHH5315_R3682
8.7
RHH5223_R3595
12.5
RHH5252_R3624
13.6
RHH5281_R3653
12.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.7
Schmiedel sample id
TPM
Classical monocyte TPM: 37.3
Samples: 91
Max TPM: 50.7
Min TPM: 23.3
MONOCYTES_1
50.7
MONOCYTES_2
50.5
MONOCYTES_3
49.9
MONOCYTES_4
48.7
MONOCYTES_5
47.3
MONOCYTES_6
46.2
MONOCYTES_7
46.0
MONOCYTES_8
45.3
MONOCYTES_9
44.7
MONOCYTES_10
44.4
MONOCYTES_11
44.1
MONOCYTES_12
44.1
MONOCYTES_13
43.8
MONOCYTES_14
43.6
MONOCYTES_15
43.4
MONOCYTES_16
43.3
MONOCYTES_17
43.2
MONOCYTES_18
42.6
MONOCYTES_19
42.5
MONOCYTES_20
42.5
MONOCYTES_21
42.2
MONOCYTES_22
42.0
MONOCYTES_23
42.0
MONOCYTES_24
41.4
MONOCYTES_25
41.4
MONOCYTES_26
41.1
MONOCYTES_27
40.9
MONOCYTES_28
40.6
MONOCYTES_29
40.4
MONOCYTES_30
40.4
MONOCYTES_31
40.3
MONOCYTES_32
40.0
MONOCYTES_33
39.5
MONOCYTES_34
39.4
MONOCYTES_35
39.3
MONOCYTES_36
39.2
MONOCYTES_37
39.2
MONOCYTES_38
38.8
MONOCYTES_39
38.6
MONOCYTES_40
37.7
MONOCYTES_41
37.7
MONOCYTES_42
37.5
MONOCYTES_43
37.2
MONOCYTES_44
37.2
MONOCYTES_45
36.8
MONOCYTES_46
36.6
MONOCYTES_47
36.5
MONOCYTES_48
36.4
MONOCYTES_49
36.3
MONOCYTES_50
36.1
MONOCYTES_51
36.0
MONOCYTES_52
35.6
MONOCYTES_53
35.5
MONOCYTES_54
35.4
MONOCYTES_55
35.3
MONOCYTES_56
35.2
MONOCYTES_57
35.2
MONOCYTES_58
35.1
MONOCYTES_59
35.1
MONOCYTES_60
34.9
MONOCYTES_61
34.8
MONOCYTES_62
34.7
MONOCYTES_63
34.6
MONOCYTES_64
34.4
MONOCYTES_65
34.2
MONOCYTES_66
33.7
MONOCYTES_67
33.4
MONOCYTES_68
33.3
MONOCYTES_69
33.1
MONOCYTES_70
33.1
MONOCYTES_71
32.8
MONOCYTES_72
32.6
MONOCYTES_73
32.4
MONOCYTES_74
32.1
MONOCYTES_75
31.8
MONOCYTES_76
31.8
MONOCYTES_77
31.7
MONOCYTES_78
31.3
MONOCYTES_79
31.2
MONOCYTES_80
30.9
MONOCYTES_81
30.7
MONOCYTES_82
30.6
MONOCYTES_83
29.4
MONOCYTES_84
29.2
MONOCYTES_85
28.9
MONOCYTES_86
28.4
MONOCYTES_87
28.0
MONOCYTES_88
27.2
MONOCYTES_89
27.0
MONOCYTES_90
25.1
MONOCYTES_91
23.3
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Non-classical monocyte TPM: 42.7
Samples: 90
Max TPM: 57.2
Min TPM: 29.5
M2_1
57.2
M2_2
52.8
M2_3
52.8
M2_4
51.6
M2_5
51.5
M2_6
51.5
M2_7
49.4
M2_8
49.1
M2_9
49.1
M2_10
48.9
M2_11
48.5
M2_12
48.0
M2_13
46.9
M2_14
46.5
M2_15
46.5
M2_16
46.1
M2_17
46.1
M2_18
45.9
M2_19
45.8
M2_20
45.8
M2_21
45.7
M2_22
45.7
M2_23
45.7
M2_24
45.7
M2_25
45.6
M2_26
45.4
M2_27
45.3
M2_28
45.3
M2_29
45.2
M2_30
45.1
M2_31
45.0
M2_32
44.9
M2_33
44.5
M2_34
44.2
M2_35
44.1
M2_36
44.1
M2_37
44.0
M2_38
44.0
M2_39
44.0
M2_40
43.1
M2_41
43.0
M2_42
43.0
M2_43
42.8
M2_44
42.8
M2_45
42.7
M2_46
42.6
M2_47
42.5
M2_48
42.5
M2_49
42.4
M2_50
42.2
M2_51
41.8
M2_52
41.7
M2_53
41.5
M2_54
41.4
M2_55
41.4
M2_56
41.3
M2_57
41.2
M2_58
41.0
M2_59
40.9
M2_60
40.6
M2_61
40.6
M2_62
40.5
M2_63
40.3
M2_64
40.1
M2_65
40.1
M2_66
40.1
M2_67
40.0
M2_68
39.8
M2_69
39.3
M2_70
38.8
M2_71
38.8
M2_72
38.7
M2_73
38.5
M2_74
37.9
M2_75
37.7
M2_76
37.7
M2_77
37.5
M2_78
37.3
M2_79
37.3
M2_80
36.9
M2_81
36.8
M2_82
36.7
M2_83
36.5
M2_84
36.5
M2_85
36.4
M2_86
36.3
M2_87
35.2
M2_88
32.9
M2_89
31.3
M2_90
29.5
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