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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:85.5 nTPM
HPA Brain:148.9 nTPM
GTEx:85.5 nTPM
FANTOM5:159.6 Scaled Tags Per Million
Pig:65.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 112.3
2565 Male, age 75, midline 150.3
2816 Male, age 47, midline 131.2
2194 Female, age 79, both hemispheres 94.3
2048 Male, age 55, midline 94.1
1981 Female, age 72, midline 91.4
Cervical spinal cord, dorsal horn
nTPM: 133.6
2296 Male, age 66, both hemispheres 206.9
2297 Male, age 75, both hemispheres 138.0
2173 Female, age 72, unknown 130.7
2069 Male, age 47, both hemispheres 124.8
1877 Male, age 55, unknown 108.7
2721 Male, age 90, both hemispheres 92.4
Cervical spinal cord, ventral horn
nTPM: 148.9
2480 Male, age 75, both hemispheres 229.2
2809 Male, age 90, both hemispheres 156.3
2068 Male, age 55, unknown 136.7
2295 Male, age 66, both hemispheres 134.5
2820 Female, age 79, both hemispheres 127.4
2098 Female, age 72, unknown 109.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 85.5
Samples: 159

Max nTPM: 170.3
Min nTPM: 23.8
Std nTPM: 26.6
Median nTPM: 83.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 170.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 159.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 152.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 148.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 141.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 141.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 135.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 133.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 133.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 129.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 128.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 123.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 120.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 120.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 119.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 118.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 117.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 117.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 116.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 113.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 113.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 111.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 111.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 109.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 108.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 107.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 105.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 105.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 105.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 104.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 104.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 104.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 104.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 104.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 103.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 103.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 101.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 101.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 100.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 98.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 97.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 97.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 96.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 95.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 94.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 94.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 94.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 94.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 93.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 93.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 93.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 92.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 92.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 90.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 90.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 90.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 89.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 89.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 89.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 89.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 88.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 88.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 86.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 86.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 86.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 85.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 85.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 84.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 84.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 83.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 83.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 82.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 82.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 82.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 81.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 81.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 81.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 80.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 80.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 79.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 79.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 78.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 78.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 76.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 76.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 76.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 76.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 75.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 75.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 74.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 74.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 74.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 74.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 73.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 73.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 72.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 71.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 70.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 70.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 69.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 69.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 69.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 68.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 68.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 67.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 67.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 67.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 67.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 66.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 66.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 66.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 66.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 64.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 64.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 64.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 63.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 62.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 61.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 61.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 61.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 60.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 59.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 58.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 58.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 57.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 57.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 54.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 53.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 53.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 50.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 48.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 47.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 47.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 46.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 44.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 43.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 42.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 41.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 38.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 33.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 26.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 23.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 159.6
FF:10159-103A6 76 years, female 162.1
FF:10181-103D1 60 years, female 157.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 65.4
Samples: 4

Max nTPM: 80.5
Min nTPM: 55.3
Sample A Female 55.3
Sample B Female 60.7
Sample C Male 80.5
Sample D Male 65.1
Ventral spinal cord
nTPM: 45.9
Samples: 4

Max nTPM: 53.9
Min nTPM: 32.2
Sample A Female 53.9
Sample B Female 32.2
Sample C Male 46.5
Sample D Male 51.1

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