A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1488.8
nTPM
Monaco:
2101.9
nTPM
Schmiedel:
389.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1488.8
HPA sample
nTPM
Memory B-cell nTPM: 1119.4
Samples: 6
Max nTPM: 1527.3
Min nTPM: 937.8
P10809_1017
937.8
P10809_1025
1077.3
P10809_1044
1527.3
P10809_1063
982.8
P10809_1092
1094.8
P10809_1105
1096.6
Naive B-cell nTPM: 1488.8
Samples: 6
Max nTPM: 1794.4
Min nTPM: 1222.1
P10809_1011
1339.4
P10809_1029
1559.8
P10809_1048
1794.4
P10809_1067
1222.1
P10809_1091
1404.7
P10809_1104
1612.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2101.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1326.0
Samples: 4
Max nTPM: 1641.5
Min nTPM: 857.0
RHH5310_R3677
1641.5
RHH5218_R3590
1191.5
RHH5247_R3619
1613.8
RHH5276_R3648
857.0
Naive B-cell nTPM: 2083.4
Samples: 4
Max nTPM: 2764.0
Min nTPM: 1243.1
RHH5308_R3675
2764.0
RHH5216_R3588
2310.7
RHH5245_R3617
1243.1
RHH5274_R3646
2015.8
Non-switched memory B-cell nTPM: 2101.9
Samples: 4
Max nTPM: 2631.7
Min nTPM: 1260.1
RHH5309_R3676
2451.3
RHH5217_R3589
2064.6
RHH5246_R3618
2631.7
RHH5275_R3647
1260.1
Plasmablast nTPM: 242.3
Samples: 4
Max nTPM: 314.6
Min nTPM: 197.6
RHH5312_R3679
226.9
RHH5220_R3592
229.9
RHH5249_R3621
314.6
RHH5278_R3650
197.6
Switched memory B-cell nTPM: 1416.6
Samples: 4
Max nTPM: 1980.2
Min nTPM: 924.2
RHH5311_R3678
1980.2
RHH5219_R3591
1526.7
RHH5248_R3620
1235.2
RHH5277_R3649
924.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
389.6
Schmiedel sample id
TPM
Naive B-cell TPM: 389.6
Samples: 91
Max TPM: 716.1
Min TPM: 74.1
B_CELL_NAIVE_1
716.1
B_CELL_NAIVE_2
699.8
B_CELL_NAIVE_3
691.6
B_CELL_NAIVE_4
690.4
B_CELL_NAIVE_5
687.6
B_CELL_NAIVE_6
654.1
B_CELL_NAIVE_7
618.5
B_CELL_NAIVE_8
615.8
B_CELL_NAIVE_9
614.6
B_CELL_NAIVE_10
588.0
B_CELL_NAIVE_11
576.5
B_CELL_NAIVE_12
561.5
B_CELL_NAIVE_13
556.6
B_CELL_NAIVE_14
556.1
B_CELL_NAIVE_15
542.8
B_CELL_NAIVE_16
527.3
B_CELL_NAIVE_17
527.2
B_CELL_NAIVE_18
522.8
B_CELL_NAIVE_19
519.6
B_CELL_NAIVE_20
519.1
B_CELL_NAIVE_21
518.6
B_CELL_NAIVE_22
514.6
B_CELL_NAIVE_23
512.7
B_CELL_NAIVE_24
508.5
B_CELL_NAIVE_25
492.7
B_CELL_NAIVE_26
489.4
B_CELL_NAIVE_27
484.7
B_CELL_NAIVE_28
473.2
B_CELL_NAIVE_29
463.5
B_CELL_NAIVE_30
461.4
B_CELL_NAIVE_31
459.2
B_CELL_NAIVE_32
445.7
B_CELL_NAIVE_33
443.9
B_CELL_NAIVE_34
425.8
B_CELL_NAIVE_35
424.1
B_CELL_NAIVE_36
421.8
B_CELL_NAIVE_37
419.5
B_CELL_NAIVE_38
413.2
B_CELL_NAIVE_39
406.8
B_CELL_NAIVE_40
405.8
B_CELL_NAIVE_41
404.8
B_CELL_NAIVE_42
400.0
B_CELL_NAIVE_43
397.0
B_CELL_NAIVE_44
394.4
B_CELL_NAIVE_45
394.0
B_CELL_NAIVE_46
392.5
B_CELL_NAIVE_47
388.1
B_CELL_NAIVE_48
385.7
B_CELL_NAIVE_49
376.7
B_CELL_NAIVE_50
375.0
B_CELL_NAIVE_51
373.7
B_CELL_NAIVE_52
367.5
B_CELL_NAIVE_53
362.6
B_CELL_NAIVE_54
359.1
B_CELL_NAIVE_55
355.5
B_CELL_NAIVE_56
348.2
B_CELL_NAIVE_57
332.0
B_CELL_NAIVE_58
330.8
B_CELL_NAIVE_59
325.5
B_CELL_NAIVE_60
314.8
B_CELL_NAIVE_61
312.5
B_CELL_NAIVE_62
311.0
B_CELL_NAIVE_63
309.0
B_CELL_NAIVE_64
307.5
B_CELL_NAIVE_65
302.8
B_CELL_NAIVE_66
286.0
B_CELL_NAIVE_67
266.3
B_CELL_NAIVE_68
263.8
B_CELL_NAIVE_69
262.7
B_CELL_NAIVE_70
259.9
B_CELL_NAIVE_71
259.2
B_CELL_NAIVE_72
255.4
B_CELL_NAIVE_73
255.0
B_CELL_NAIVE_74
249.5
B_CELL_NAIVE_75
247.1
B_CELL_NAIVE_76
225.1
B_CELL_NAIVE_77
218.4
B_CELL_NAIVE_78
215.4
B_CELL_NAIVE_79
215.2
B_CELL_NAIVE_80
215.0
B_CELL_NAIVE_81
213.0
B_CELL_NAIVE_82
211.9
B_CELL_NAIVE_83
192.8
B_CELL_NAIVE_84
175.9
B_CELL_NAIVE_85
174.4
B_CELL_NAIVE_86
167.4
B_CELL_NAIVE_87
142.7
B_CELL_NAIVE_88
112.1
B_CELL_NAIVE_89
106.7
B_CELL_NAIVE_90
98.6
B_CELL_NAIVE_91
74.1
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