A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
301.1
nTPM
Monaco:
296.9
nTPM
Schmiedel:
160.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
301.1
HPA sample
nTPM
Classical monocyte nTPM: 12.5
Samples: 6
Max nTPM: 18.5
Min nTPM: 7.1
P10809_1003
14.4
P10809_1020
18.5
P10809_1039
11.2
P10809_1058
7.1
P10809_1080
11.9
P10809_1107
11.9
Intermediate monocyte nTPM: 189.3
Samples: 6
Max nTPM: 296.5
Min nTPM: 95.0
P10809_1004
230.7
P10809_1023
296.5
P10809_1042
206.8
P10809_1061
128.1
P10809_1081
95.0
P10809_1108
178.4
Non-classical monocyte nTPM: 301.1
Samples: 5
Max nTPM: 346.9
Min nTPM: 209.8
P10809_1005
315.7
P10809_1053
346.9
P10809_1072
286.2
P10809_1082
209.8
P10809_1109
346.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
296.9
Monaco sample
nTPM
Classical monocyte nTPM: 12.9
Samples: 4
Max nTPM: 15.2
Min nTPM: 11.5
RHH5313_R3680
12.6
RHH5221_R3593
11.5
RHH5250_R3622
15.2
RHH5279_R3651
12.3
Intermediate monocyte nTPM: 226.6
Samples: 4
Max nTPM: 275.7
Min nTPM: 125.2
RHH5314_R3681
275.7
RHH5222_R3594
125.2
RHH5251_R3623
238.2
RHH5280_R3652
267.5
Non-classical monocyte nTPM: 296.9
Samples: 4
Max nTPM: 410.9
Min nTPM: 161.5
RHH5315_R3682
340.7
RHH5223_R3595
161.5
RHH5252_R3624
274.5
RHH5281_R3653
410.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
160.8
Schmiedel sample id
TPM
Classical monocyte TPM: 5.0
Samples: 91
Max TPM: 10.8
Min TPM: 1.7
MONOCYTES_1
10.8
MONOCYTES_2
8.9
MONOCYTES_3
8.8
MONOCYTES_4
8.7
MONOCYTES_5
8.3
MONOCYTES_6
8.2
MONOCYTES_7
8.1
MONOCYTES_8
7.9
MONOCYTES_9
7.7
MONOCYTES_10
7.4
MONOCYTES_11
7.2
MONOCYTES_12
7.2
MONOCYTES_13
7.1
MONOCYTES_14
7.0
MONOCYTES_15
6.8
MONOCYTES_16
6.7
MONOCYTES_17
6.7
MONOCYTES_18
6.6
MONOCYTES_19
6.6
MONOCYTES_20
6.4
MONOCYTES_21
6.4
MONOCYTES_22
6.3
MONOCYTES_23
6.1
MONOCYTES_24
5.9
MONOCYTES_25
5.9
MONOCYTES_26
5.9
MONOCYTES_27
5.8
MONOCYTES_28
5.8
MONOCYTES_29
5.8
MONOCYTES_30
5.8
MONOCYTES_31
5.8
MONOCYTES_32
5.5
MONOCYTES_33
5.5
MONOCYTES_34
5.4
MONOCYTES_35
5.3
MONOCYTES_36
5.3
MONOCYTES_37
5.3
MONOCYTES_38
5.3
MONOCYTES_39
5.2
MONOCYTES_40
5.1
MONOCYTES_41
5.1
MONOCYTES_42
4.8
MONOCYTES_43
4.8
MONOCYTES_44
4.7
MONOCYTES_45
4.7
MONOCYTES_46
4.6
MONOCYTES_47
4.6
MONOCYTES_48
4.6
MONOCYTES_49
4.5
MONOCYTES_50
4.5
MONOCYTES_51
4.5
MONOCYTES_52
4.5
MONOCYTES_53
4.5
MONOCYTES_54
4.4
MONOCYTES_55
4.4
MONOCYTES_56
4.3
MONOCYTES_57
4.2
MONOCYTES_58
4.1
MONOCYTES_59
4.1
MONOCYTES_60
4.0
MONOCYTES_61
4.0
MONOCYTES_62
3.9
MONOCYTES_63
3.9
MONOCYTES_64
3.9
MONOCYTES_65
3.9
MONOCYTES_66
3.9
MONOCYTES_67
3.8
MONOCYTES_68
3.8
MONOCYTES_69
3.7
MONOCYTES_70
3.7
MONOCYTES_71
3.6
MONOCYTES_72
3.6
MONOCYTES_73
3.5
MONOCYTES_74
3.4
MONOCYTES_75
3.4
MONOCYTES_76
3.4
MONOCYTES_77
3.3
MONOCYTES_78
2.9
MONOCYTES_79
2.9
MONOCYTES_80
2.9
MONOCYTES_81
2.9
MONOCYTES_82
2.7
MONOCYTES_83
2.6
MONOCYTES_84
2.6
MONOCYTES_85
2.4
MONOCYTES_86
2.3
MONOCYTES_87
2.3
MONOCYTES_88
2.3
MONOCYTES_89
2.1
MONOCYTES_90
2.1
MONOCYTES_91
1.7
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Non-classical monocyte TPM: 160.8
Samples: 90
Max TPM: 316.6
Min TPM: 55.3
M2_1
316.6
M2_2
300.5
M2_3
257.7
M2_4
255.1
M2_5
254.5
M2_6
235.7
M2_7
228.4
M2_8
227.2
M2_9
226.9
M2_10
224.0
M2_11
223.0
M2_12
220.9
M2_13
215.4
M2_14
213.7
M2_15
213.6
M2_16
212.1
M2_17
211.6
M2_18
206.0
M2_19
203.3
M2_20
203.1
M2_21
202.5
M2_22
198.4
M2_23
193.2
M2_24
191.0
M2_25
190.8
M2_26
183.8
M2_27
181.3
M2_28
180.2
M2_29
178.6
M2_30
177.4
M2_31
176.7
M2_32
175.6
M2_33
174.6
M2_34
173.0
M2_35
173.0
M2_36
172.6
M2_37
171.7
M2_38
169.8
M2_39
169.5
M2_40
166.3
M2_41
165.3
M2_42
163.9
M2_43
163.0
M2_44
162.5
M2_45
161.7
M2_46
159.4
M2_47
156.4
M2_48
156.1
M2_49
156.0
M2_50
155.5
M2_51
154.7
M2_52
150.3
M2_53
150.0
M2_54
145.9
M2_55
145.9
M2_56
144.2
M2_57
144.0
M2_58
143.1
M2_59
143.0
M2_60
142.4
M2_61
141.0
M2_62
140.4
M2_63
136.6
M2_64
131.5
M2_65
130.6
M2_66
125.8
M2_67
125.3
M2_68
123.1
M2_69
122.1
M2_70
121.7
M2_71
119.4
M2_72
116.2
M2_73
113.4
M2_74
111.5
M2_75
108.4
M2_76
107.7
M2_77
103.3
M2_78
101.1
M2_79
98.1
M2_80
96.9
M2_81
96.1
M2_82
94.7
M2_83
89.5
M2_84
84.1
M2_85
78.1
M2_86
77.6
M2_87
77.3
M2_88
73.1
M2_89
60.8
M2_90
55.3
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