We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RHBDF1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RHBDF1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:14.2 nTPM
HPA Brain:10.3 nTPM
GTEx:14.2 nTPM
FANTOM5:4.4 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:6.1 nTPM
Allen mouse:4.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.3
Sample id Sample description nTPM
Amygdala
nTPM: 8.5
2695 Female, age 67, right hemisphere 9.4
2814 Male, age 76, right hemisphere 8.6
1987 Female, age 91, left hemisphere 8.3
2517 Female, age 94, left hemisphere 8.1
2514 Male, age 75, right hemisphere 7.9
Basal amygdala
nTPM: 9.6
2827 Female, age 67, right hemisphere 11.7
2609 Male, age 75, right hemisphere 11.6
2243 Female, age 91, right hemisphere 9.4
1955 Male, age 76, both hemispheres 8.5
2685 Female, age 94, left hemisphere 8.5
2110 Male, age 80, left hemisphere 8.0
Central amygdala
nTPM: 9.9
2826 Female, age 94, left hemisphere 14.6
2515 Male, age 75, right hemisphere 10.1
2239 Male, age 80, left hemisphere 9.3
1905 Male, age 76, both hemispheres 8.0
2701 Female, age 91, right hemisphere 7.4
Corticomedial amygdala
nTPM: 8.9
2535 Female, age 67, right hemisphere 10.9
2428 Male, age 75, right hemisphere 10.7
2242 Female, age 91, right hemisphere 9.4
2240 Male, age 76, both hemispheres 8.3
2829 Male, age 80, left hemisphere 7.3
2429 Female, age 94, left hemisphere 6.7
Lateral amygdala
nTPM: 10.3
2830 Female, age 67, right hemisphere 13.7
2516 Male, age 75, right hemisphere 12.5
2255 Female, age 91, right hemisphere 9.7
2256 Male, age 80, left hemisphere 9.2
2534 Female, age 94, left hemisphere 8.7
1883 Male, age 76, both hemispheres 8.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 14.2
Samples: 152

Max nTPM: 41.6
Min nTPM: 2.1
Std nTPM: 6.9
Median nTPM: 12.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 41.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 31.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 30.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 29.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 29.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 26.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 26.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 26.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 25.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 24.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 23.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 22.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 22.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 22.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 22.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 22.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 22.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 21.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 21.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 21.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 21.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 20.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 20.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 19.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 19.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 19.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 18.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 18.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 18.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 18.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 18.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 18.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 18.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 17.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 17.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 16.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 16.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 16.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 16.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 16.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 16.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 16.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 15.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 15.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 15.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 15.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 15.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 15.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 14.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 14.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 14.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 14.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 14.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 14.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 14.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 14.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 14.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 13.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 13.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 13.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 13.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 13.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 13.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 12.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 12.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 12.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 12.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 12.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 12.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 12.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 12.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 12.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 11.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 11.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 11.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 11.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 11.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 11.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 11.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 11.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 11.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 11.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 11.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 11.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 11.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 11.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 10.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 10.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 10.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 10.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 10.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 10.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 10.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 10.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 9.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 9.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 9.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 9.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 9.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 9.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 9.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 9.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 9.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 9.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 9.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 8.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 8.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 8.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 8.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 8.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 8.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 8.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 8.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 8.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 8.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 8.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 7.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 7.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 7.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 7.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 7.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 7.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 7.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 7.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 7.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 7.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 7.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 7.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 6.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 6.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 6.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 5.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 5.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 3.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 4.4
FF:10151-102I7 76 years, female 4.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.3
Pig sample Sample description nTPM
Amygdala
nTPM: 9.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.9
Sample A Female 9.0
Sample B Female 7.9
Sample C Male 10.8
Sample D Male 9.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 6.1
Samples: 4

Max nTPM: 8.4
Min nTPM: 4.6
Sample A Male 4.6
Sample B Male 8.4
Sample C Female 5.1
Sample D Female 6.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.8
2533 Antisense, RP_040526_01_F02, Mouse strain C57BL/6J (56 days, male) 6.8
100144091 Antisense, RP_110421_01_F06, Mouse strain C57BL/6J (56 days, male) 2.7
2534 Antisense, RP_040526_01_F02, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org