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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
132.0
Sample id
Sample description
nTPM
Amygdala nTPM: 87.0
1987
Female, age 91, left hemisphere
201.9
2517
Female, age 94, left hemisphere
118.9
2514
Male, age 75, right hemisphere
50.1
2695
Female, age 67, right hemisphere
48.9
2814
Male, age 76, right hemisphere
15.2
Basal amygdala nTPM: 104.4
2243
Female, age 91, right hemisphere
190.2
2685
Female, age 94, left hemisphere
142.1
2110
Male, age 80, left hemisphere
108.0
2827
Female, age 67, right hemisphere
73.6
1955
Male, age 76, both hemispheres
70.0
2609
Male, age 75, right hemisphere
42.2
Central amygdala nTPM: 111.4
2701
Female, age 91, right hemisphere
212.7
2239
Male, age 80, left hemisphere
161.8
2826
Female, age 94, left hemisphere
95.1
2515
Male, age 75, right hemisphere
71.4
1905
Male, age 76, both hemispheres
16.0
Corticomedial amygdala nTPM: 132.0
2242
Female, age 91, right hemisphere
237.0
2429
Female, age 94, left hemisphere
155.8
2829
Male, age 80, left hemisphere
155.5
2535
Female, age 67, right hemisphere
133.2
2240
Male, age 76, both hemispheres
68.3
2428
Male, age 75, right hemisphere
42.1
Lateral amygdala nTPM: 101.5
2255
Female, age 91, right hemisphere
219.6
2256
Male, age 80, left hemisphere
118.8
2534
Female, age 94, left hemisphere
113.4
1883
Male, age 76, both hemispheres
60.2
2830
Female, age 67, right hemisphere
52.4
2516
Male, age 75, right hemisphere
44.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 52.9
Samples: 181
Max nTPM: 145.2
Min nTPM: 7.9
Std nTPM: 23.6
Median nTPM: 49.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
145.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
122.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
120.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
119.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
110.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
109.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
109.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
103.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
99.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
98.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
94.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
91.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
88.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
87.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
87.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
86.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
83.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
81.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
78.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
78.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
77.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
77.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
77.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
77.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
76.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
75.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
73.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
73.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
73.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
72.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
72.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
71.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
71.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
70.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
70.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
70.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
70.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
70.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
69.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
69.1
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
68.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
68.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
67.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
67.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
66.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
66.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
66.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
66.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
65.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
64.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
64.1
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
63.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
62.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
61.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
61.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
61.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
61.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
60.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
60.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
60.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
59.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
59.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
59.4
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
59.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
59.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
58.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
57.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
57.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
57.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
56.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
55.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
55.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
55.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
54.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
54.6
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
54.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
54.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
54.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
52.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
52.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
51.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
51.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
51.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
51.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
50.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
50.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
49.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
49.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
49.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
49.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
49.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
48.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
48.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
48.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
48.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
48.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
48.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
48.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
48.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
47.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
47.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
47.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
47.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
47.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
46.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
46.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
46.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
46.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
45.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
45.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
45.2
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
45.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
44.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
44.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
44.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
44.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
43.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
43.0
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
42.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
41.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
41.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
41.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
41.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
41.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
41.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
40.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
40.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
39.9
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
38.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
38.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
38.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
38.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
37.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
37.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
36.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
36.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
36.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
36.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
35.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
34.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
34.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
34.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
33.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
33.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
32.8
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
32.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
31.9
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
31.7
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
31.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
31.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
31.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
30.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
30.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
30.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
29.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
28.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
28.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
26.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
26.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
26.1
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
25.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
24.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
24.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
24.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
24.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
23.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
23.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
21.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
21.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
20.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
19.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
19.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
17.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
16.3
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
15.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
13.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
11.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
10.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
7.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
Pig sample
Sample description
nTPM
Amygdala nTPM: 14.5
Samples: 4
Max nTPM: 18.5
Min nTPM: 9.6
Sample A
Female
14.6
Sample B
Female
18.5
Sample C
Male
9.6
Sample D
Male
15.4
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 22.4
Samples: 4
Max nTPM: 32.5
Min nTPM: 15.2
Sample A
Male
32.5
Sample B
Male
17.5
Sample C
Female
15.2
Sample D
Female
24.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
