A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.1
nTPM
Monaco:
9.5
nTPM
Schmiedel:
10.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.1
HPA sample
nTPM
Memory B-cell nTPM: 7.4
Samples: 6
Max nTPM: 21.8
Min nTPM: 3.4
P10809_1017
4.8
P10809_1025
3.4
P10809_1044
21.8
P10809_1063
3.6
P10809_1092
4.4
P10809_1105
6.5
Naive B-cell nTPM: 10.1
Samples: 6
Max nTPM: 33.2
Min nTPM: 3.9
P10809_1011
4.0
P10809_1029
6.7
P10809_1048
33.2
P10809_1067
5.3
P10809_1091
3.9
P10809_1104
7.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 9.6
Samples: 4
Max nTPM: 14.6
Min nTPM: 7.1
RHH5310_R3677
7.1
RHH5218_R3590
8.4
RHH5247_R3619
14.6
RHH5276_R3648
8.1
Naive B-cell nTPM: 7.0
Samples: 4
Max nTPM: 12.2
Min nTPM: 1.1
RHH5308_R3675
9.6
RHH5216_R3588
1.1
RHH5245_R3617
5.0
RHH5274_R3646
12.2
Non-switched memory B-cell nTPM: 6.2
Samples: 4
Max nTPM: 11.1
Min nTPM: 1.8
RHH5309_R3676
11.1
RHH5217_R3589
1.8
RHH5246_R3618
3.2
RHH5275_R3647
8.7
Plasmablast nTPM: 9.3
Samples: 4
Max nTPM: 14.2
Min nTPM: 0.8
RHH5312_R3679
0.8
RHH5220_R3592
9.1
RHH5249_R3621
14.2
RHH5278_R3650
13.2
Switched memory B-cell nTPM: 8.5
Samples: 4
Max nTPM: 16.4
Min nTPM: 1.2
RHH5311_R3678
1.6
RHH5219_R3591
16.4
RHH5248_R3620
1.2
RHH5277_R3649
14.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.9
Schmiedel sample id
TPM
Naive B-cell TPM: 10.9
Samples: 91
Max TPM: 23.3
Min TPM: 0.6
B_CELL_NAIVE_1
23.3
B_CELL_NAIVE_2
22.6
B_CELL_NAIVE_3
22.1
B_CELL_NAIVE_4
22.1
B_CELL_NAIVE_5
20.8
B_CELL_NAIVE_6
20.4
B_CELL_NAIVE_7
19.9
B_CELL_NAIVE_8
19.8
B_CELL_NAIVE_9
19.6
B_CELL_NAIVE_10
18.5
B_CELL_NAIVE_11
18.0
B_CELL_NAIVE_12
17.9
B_CELL_NAIVE_13
17.8
B_CELL_NAIVE_14
17.4
B_CELL_NAIVE_15
17.3
B_CELL_NAIVE_16
17.1
B_CELL_NAIVE_17
16.3
B_CELL_NAIVE_18
16.3
B_CELL_NAIVE_19
16.2
B_CELL_NAIVE_20
15.6
B_CELL_NAIVE_21
14.9
B_CELL_NAIVE_22
14.9
B_CELL_NAIVE_23
14.4
B_CELL_NAIVE_24
13.7
B_CELL_NAIVE_25
13.6
B_CELL_NAIVE_26
13.6
B_CELL_NAIVE_27
13.5
B_CELL_NAIVE_28
13.5
B_CELL_NAIVE_29
13.4
B_CELL_NAIVE_30
13.1
B_CELL_NAIVE_31
13.1
B_CELL_NAIVE_32
13.0
B_CELL_NAIVE_33
12.8
B_CELL_NAIVE_34
12.8
B_CELL_NAIVE_35
12.7
B_CELL_NAIVE_36
12.6
B_CELL_NAIVE_37
12.6
B_CELL_NAIVE_38
12.5
B_CELL_NAIVE_39
12.5
B_CELL_NAIVE_40
12.5
B_CELL_NAIVE_41
12.4
B_CELL_NAIVE_42
12.3
B_CELL_NAIVE_43
12.3
B_CELL_NAIVE_44
12.1
B_CELL_NAIVE_45
12.0
B_CELL_NAIVE_46
11.6
B_CELL_NAIVE_47
10.1
B_CELL_NAIVE_48
10.1
B_CELL_NAIVE_49
10.0
B_CELL_NAIVE_50
9.7
B_CELL_NAIVE_51
9.6
B_CELL_NAIVE_52
9.1
B_CELL_NAIVE_53
8.9
B_CELL_NAIVE_54
8.9
B_CELL_NAIVE_55
8.9
B_CELL_NAIVE_56
8.6
B_CELL_NAIVE_57
8.6
B_CELL_NAIVE_58
8.5
B_CELL_NAIVE_59
8.4
B_CELL_NAIVE_60
8.3
B_CELL_NAIVE_61
8.2
B_CELL_NAIVE_62
8.0
B_CELL_NAIVE_63
7.9
B_CELL_NAIVE_64
7.8
B_CELL_NAIVE_65
7.3
B_CELL_NAIVE_66
7.3
B_CELL_NAIVE_67
7.1
B_CELL_NAIVE_68
7.0
B_CELL_NAIVE_69
6.7
B_CELL_NAIVE_70
6.2
B_CELL_NAIVE_71
6.1
B_CELL_NAIVE_72
5.9
B_CELL_NAIVE_73
5.6
B_CELL_NAIVE_74
5.6
B_CELL_NAIVE_75
5.3
B_CELL_NAIVE_76
5.3
B_CELL_NAIVE_77
4.9
B_CELL_NAIVE_78
4.6
B_CELL_NAIVE_79
4.5
B_CELL_NAIVE_80
4.0
B_CELL_NAIVE_81
3.8
B_CELL_NAIVE_82
3.6
B_CELL_NAIVE_83
3.5
B_CELL_NAIVE_84
3.4
B_CELL_NAIVE_85
2.8
B_CELL_NAIVE_86
2.0
B_CELL_NAIVE_87
1.6
B_CELL_NAIVE_88
1.4
B_CELL_NAIVE_89
1.1
B_CELL_NAIVE_90
1.0
B_CELL_NAIVE_91
0.6
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