A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
10.1
nTPM
Schmiedel:
18.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
Classical monocyte nTPM: 4.1
Samples: 6
Max nTPM: 6.3
Min nTPM: 1.3
P10809_1003
1.3
P10809_1020
3.7
P10809_1039
6.3
P10809_1058
4.2
P10809_1080
3.6
P10809_1107
5.2
Intermediate monocyte nTPM: 3.6
Samples: 6
Max nTPM: 5.6
Min nTPM: 1.8
P10809_1004
2.9
P10809_1023
3.0
P10809_1042
4.7
P10809_1061
1.8
P10809_1081
3.4
P10809_1108
5.6
Non-classical monocyte nTPM: 3.9
Samples: 5
Max nTPM: 7.0
Min nTPM: 0.0
P10809_1005
3.2
P10809_1053
3.6
P10809_1072
0.0
P10809_1082
5.7
P10809_1109
7.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.1
Monaco sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 4
Max nTPM: 13.8
Min nTPM: 8.3
RHH5313_R3680
8.6
RHH5221_R3593
8.3
RHH5250_R3622
13.8
RHH5279_R3651
9.7
Intermediate monocyte nTPM: 8.5
Samples: 4
Max nTPM: 20.4
Min nTPM: 0.7
RHH5314_R3681
20.4
RHH5222_R3594
6.5
RHH5251_R3623
6.2
RHH5280_R3652
0.7
Non-classical monocyte nTPM: 6.1
Samples: 4
Max nTPM: 9.9
Min nTPM: 1.7
RHH5315_R3682
9.9
RHH5223_R3595
4.3
RHH5252_R3624
8.5
RHH5281_R3653
1.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.7
Schmiedel sample id
TPM
Classical monocyte TPM: 18.7
Samples: 91
Max TPM: 44.2
Min TPM: 4.6
MONOCYTES_1
44.2
MONOCYTES_2
35.5
MONOCYTES_3
35.4
MONOCYTES_4
34.1
MONOCYTES_5
33.0
MONOCYTES_6
32.9
MONOCYTES_7
31.4
MONOCYTES_8
30.5
MONOCYTES_9
29.6
MONOCYTES_10
29.6
MONOCYTES_11
29.5
MONOCYTES_12
29.3
MONOCYTES_13
29.2
MONOCYTES_14
28.8
MONOCYTES_15
26.8
MONOCYTES_16
26.7
MONOCYTES_17
26.4
MONOCYTES_18
26.4
MONOCYTES_19
26.3
MONOCYTES_20
26.1
MONOCYTES_21
25.9
MONOCYTES_22
25.9
MONOCYTES_23
25.8
MONOCYTES_24
25.1
MONOCYTES_25
24.6
MONOCYTES_26
23.9
MONOCYTES_27
23.5
MONOCYTES_28
23.0
MONOCYTES_29
23.0
MONOCYTES_30
22.9
MONOCYTES_31
22.7
MONOCYTES_32
22.2
MONOCYTES_33
22.0
MONOCYTES_34
21.6
MONOCYTES_35
21.4
MONOCYTES_36
20.9
MONOCYTES_37
20.5
MONOCYTES_38
20.3
MONOCYTES_39
19.3
MONOCYTES_40
18.9
MONOCYTES_41
18.5
MONOCYTES_42
18.3
MONOCYTES_43
18.3
MONOCYTES_44
18.0
MONOCYTES_45
18.0
MONOCYTES_46
17.7
MONOCYTES_47
17.6
MONOCYTES_48
17.4
MONOCYTES_49
16.7
MONOCYTES_50
16.2
MONOCYTES_51
15.8
MONOCYTES_52
15.7
MONOCYTES_53
15.7
MONOCYTES_54
15.2
MONOCYTES_55
15.1
MONOCYTES_56
15.1
MONOCYTES_57
15.0
MONOCYTES_58
14.8
MONOCYTES_59
14.4
MONOCYTES_60
14.3
MONOCYTES_61
13.9
MONOCYTES_62
13.7
MONOCYTES_63
12.9
MONOCYTES_64
12.8
MONOCYTES_65
12.6
MONOCYTES_66
12.5
MONOCYTES_67
12.3
MONOCYTES_68
11.9
MONOCYTES_69
11.8
MONOCYTES_70
11.7
MONOCYTES_71
11.4
MONOCYTES_72
11.2
MONOCYTES_73
11.2
MONOCYTES_74
10.8
MONOCYTES_75
9.7
MONOCYTES_76
9.4
MONOCYTES_77
9.0
MONOCYTES_78
8.9
MONOCYTES_79
8.7
MONOCYTES_80
8.7
MONOCYTES_81
8.6
MONOCYTES_82
8.5
MONOCYTES_83
8.5
MONOCYTES_84
8.2
MONOCYTES_85
8.0
MONOCYTES_86
7.6
MONOCYTES_87
7.0
MONOCYTES_88
6.7
MONOCYTES_89
6.6
MONOCYTES_90
6.0
MONOCYTES_91
4.6
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Non-classical monocyte TPM: 17.3
Samples: 90
Max TPM: 48.3
Min TPM: 2.2
M2_1
48.3
M2_2
42.6
M2_3
41.8
M2_4
34.8
M2_5
34.3
M2_6
34.0
M2_7
33.1
M2_8
32.8
M2_9
29.3
M2_10
28.9
M2_11
27.5
M2_12
27.4
M2_13
27.0
M2_14
26.6
M2_15
26.0
M2_16
25.8
M2_17
25.6
M2_18
24.4
M2_19
24.3
M2_20
24.2
M2_21
23.7
M2_22
23.4
M2_23
23.2
M2_24
23.0
M2_25
22.6
M2_26
22.5
M2_27
22.4
M2_28
22.3
M2_29
22.1
M2_30
21.8
M2_31
21.5
M2_32
21.1
M2_33
20.9
M2_34
20.8
M2_35
20.2
M2_36
20.2
M2_37
20.0
M2_38
19.2
M2_39
19.2
M2_40
18.1
M2_41
17.6
M2_42
17.5
M2_43
16.8
M2_44
16.5
M2_45
16.5
M2_46
16.0
M2_47
15.9
M2_48
15.8
M2_49
15.6
M2_50
15.5
M2_51
15.3
M2_52
15.2
M2_53
14.7
M2_54
14.3
M2_55
13.6
M2_56
13.4
M2_57
13.4
M2_58
13.2
M2_59
11.8
M2_60
11.6
M2_61
11.6
M2_62
11.3
M2_63
11.0
M2_64
10.5
M2_65
10.4
M2_66
10.2
M2_67
10.0
M2_68
9.8
M2_69
9.0
M2_70
8.8
M2_71
8.6
M2_72
7.9
M2_73
7.9
M2_74
7.7
M2_75
7.5
M2_76
6.2
M2_77
6.0
M2_78
6.0
M2_79
5.7
M2_80
5.5
M2_81
5.5
M2_82
5.2
M2_83
5.2
M2_84
5.1
M2_85
4.6
M2_86
4.1
M2_87
2.8
M2_88
2.7
M2_89
2.6
M2_90
2.2
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