BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.4 nTPM
HPA Brain:30.7 nTPM
GTEx:12.4 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:15.4 nTPM
Mouse:8.2 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 30.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.9
2288 Male, age 75, left hemisphere 24.7
2481 Female, age 94, left hemisphere 16.6
2846 Female, age 79, unknown 16.4
1781 Male, age 74, unknown 13.7
1854 Male, age 80, left hemisphere 13.6
2290 Female, age 72, unknown 13.6
2289 Male, age 61, right hemisphere 11.0
1857 Female, age 85, left hemisphere 9.8
Globus pallidus, externus
nTPM: 25.9
1996 Male, age 80, right hemisphere 29.8
2567 Female, age 72, unknown 28.6
2772 Female, age 79, unknown 25.7
2646 Male, age 61, right hemisphere 23.1
2395 Male, age 75, both hemispheres 22.4
Globus pallidus, internus
nTPM: 30.7
2111 Female, age 85, right hemisphere 37.1
2287 Male, age 75, right hemisphere 37.1
2778 Female, age 91, both hemispheres 31.0
1818 Male, age 74, unknown 29.9
2566 Female, age 72, unknown 29.0
2037 Male, age 80, right hemisphere 27.4
2483 Female, age 94, right hemisphere 23.4
Nucleus accumbens
nTPM: 16.6
2286 Male, age 75, left hemisphere 25.4
2391 Female, age 94, left hemisphere 24.5
2698 Female, age 72, unknown 18.0
2732 Male, age 80, right hemisphere 17.2
1783 Male, age 74, unknown 14.3
1806 Female, age 85, left hemisphere 13.4
2824 Male, age 61, right hemisphere 10.5
1856 Female, age 91, right hemisphere 9.9
Nucleus basalis of Meynert
nTPM: 18.3
2569 Male, age 61, both hemispheres 20.2
2821 Male, age 75, both hemispheres 20.0
2484 Female, age 94, left hemisphere 18.1
2393 Male, age 80, right hemisphere 15.0
Nucleus of the diagonal band
nTPM: 11.7
2029 Male, age 61, right hemisphere 13.2
2775 Male, age 80, right hemisphere 12.6
1812 Female, age 91, both hemispheres 11.7
1979 Male, age 74, unknown 11.6
2195 Female, age 85, both hemispheres 9.3
Putamen
nTPM: 16.0
2482 Female, age 94, left hemisphere 19.2
1829 Male, age 74, unknown 18.6
2489 Female, age 72, unknown 18.1
2647 Male, age 75, left hemisphere 16.4
1937 Female, age 91, right hemisphere 15.3
2466 Female, age 79, unknown 15.1
1838 Male, age 80, right hemisphere 9.2
Septal nuclei
nTPM: 12.7
2394 Male, age 61, left hemisphere 15.6
2031 Female, age 72, unknown 13.1
2629 Female, age 94, right hemisphere 13.0
1960 Male, age 74, unknown 11.9
2009 Female, age 91, both hemispheres 11.9
2199 Male, age 80, right hemisphere 11.8
2059 Female, age 85, both hemispheres 11.7
Stria terminalis, bed nucleus
nTPM: 13.5
2201 Male, age 74, unknown 14.7
1974 Female, age 91, both hemispheres 13.6
2486 Female, age 94, both hemispheres 12.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 12.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.5
Samples: 246

Max nTPM: 24.6
Min nTPM: 4.3
Std nTPM: 3.7
Median nTPM: 9.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 24.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 22.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 22.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 22.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 19.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 18.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 18.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 18.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 18.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 18.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 18.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.4
Samples: 246

Max nTPM: 22.8
Min nTPM: 2.4
Std nTPM: 3.1
Median nTPM: 6.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 22.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 21.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 18.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 17.5
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 16.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 16.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 16.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 16.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 15.0
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 14.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 13.9
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Brain - Putamen (basal ganglia)
Average nTPM: 12.4
Samples: 205

Max nTPM: 24.7
Min nTPM: 3.9
Std nTPM: 4.0
Median nTPM: 12.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 24.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 23.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 22.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 21.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 21.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 20.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 20.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 20.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 20.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 20.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 20.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.5
FF:10164-103B2 76 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 31.6
FF:10037-101F1 23-56 years, mixed 31.6
Putamen
Scaled Tags Per Million: 14.4
FF:10176-103C5 60 years, female 14.4
Globus pallidus
Scaled Tags Per Million: 33.2
FF:10161-103A8 76 years, female 38.2
FF:10175-103C4 60 years, female 28.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 15.4
Pig sample Sample description nTPM
Caudate
nTPM: 10.2
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.5
Sample A Female 9.9
Sample B Female 9.5
Sample C Male 10.3
Sample D Male 11.1
Putamen
nTPM: 15.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 11.3
Sample A Female 21.3
Sample B Female 11.3
Sample C Male 14.9
Sample D Male 14.0
Septum
nTPM: 11.3
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.6
Sample A Female 12.8
Sample B Female 8.6
Sample C Male 13.2
Sample D Male 10.7
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 10.6
Sample C Male 17.3
Sample D Male 14.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 8.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.6
Sample A Male 7.7
Sample B Male 7.6
Sample C Female 8.3
Sample D Female 9.3
Septum
nTPM: 6.0
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.0
Sample A Male 7.2
Sample B Male 5.6
Sample C Female 5.0
Sample D Female 6.3
Ventral forebrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.3
Sample A Male 7.4
Sample B Male 7.3
Sample C Female 7.4
Sample D Female 8.8

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
294041 Antisense, RP_040617_02_E11, Mouse strain C57BL/6J (56 days, male) 1.2
77278965 Antisense, RP_070116_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.6
294041 Antisense, RP_040617_02_E11, Mouse strain C57BL/6J (56 days, male) 1.2
77278965 Antisense, RP_070116_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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