A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
388.0
nTPM
Monaco:
415.9
nTPM
Schmiedel:
155.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
388.0
HPA sample
nTPM
Memory B-cell nTPM: 388.0
Samples: 6
Max nTPM: 669.7
Min nTPM: 242.2
P10809_1017
242.2
P10809_1025
403.5
P10809_1044
669.7
P10809_1063
297.2
P10809_1092
353.9
P10809_1105
361.4
Naive B-cell nTPM: 307.3
Samples: 6
Max nTPM: 684.8
Min nTPM: 145.3
P10809_1011
145.3
P10809_1029
228.9
P10809_1048
684.8
P10809_1067
232.5
P10809_1091
278.5
P10809_1104
274.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
415.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 250.0
Samples: 4
Max nTPM: 364.0
Min nTPM: 151.5
RHH5310_R3677
328.3
RHH5218_R3590
156.2
RHH5247_R3619
364.0
RHH5276_R3648
151.5
Naive B-cell nTPM: 190.0
Samples: 4
Max nTPM: 269.5
Min nTPM: 138.7
RHH5308_R3675
269.5
RHH5216_R3588
203.1
RHH5245_R3617
148.5
RHH5274_R3646
138.7
Non-switched memory B-cell nTPM: 223.8
Samples: 4
Max nTPM: 287.1
Min nTPM: 149.7
RHH5309_R3676
269.3
RHH5217_R3589
189.1
RHH5246_R3618
287.1
RHH5275_R3647
149.7
Plasmablast nTPM: 415.9
Samples: 4
Max nTPM: 464.3
Min nTPM: 363.1
RHH5312_R3679
432.6
RHH5220_R3592
363.1
RHH5249_R3621
464.3
RHH5278_R3650
403.7
Switched memory B-cell nTPM: 234.6
Samples: 4
Max nTPM: 355.0
Min nTPM: 122.5
RHH5311_R3678
355.0
RHH5219_R3591
303.7
RHH5248_R3620
122.5
RHH5277_R3649
157.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.7
Schmiedel sample id
TPM
Naive B-cell TPM: 155.7
Samples: 91
Max TPM: 213.9
Min TPM: 89.9
B_CELL_NAIVE_1
213.9
B_CELL_NAIVE_2
200.1
B_CELL_NAIVE_3
197.8
B_CELL_NAIVE_4
194.7
B_CELL_NAIVE_5
190.0
B_CELL_NAIVE_6
186.8
B_CELL_NAIVE_7
186.7
B_CELL_NAIVE_8
185.4
B_CELL_NAIVE_9
184.7
B_CELL_NAIVE_10
184.0
B_CELL_NAIVE_11
182.7
B_CELL_NAIVE_12
181.8
B_CELL_NAIVE_13
179.3
B_CELL_NAIVE_14
177.7
B_CELL_NAIVE_15
175.3
B_CELL_NAIVE_16
174.5
B_CELL_NAIVE_17
174.5
B_CELL_NAIVE_18
173.4
B_CELL_NAIVE_19
171.8
B_CELL_NAIVE_20
170.7
B_CELL_NAIVE_21
169.3
B_CELL_NAIVE_22
168.8
B_CELL_NAIVE_23
168.3
B_CELL_NAIVE_24
167.5
B_CELL_NAIVE_25
166.3
B_CELL_NAIVE_26
164.8
B_CELL_NAIVE_27
164.8
B_CELL_NAIVE_28
164.8
B_CELL_NAIVE_29
164.7
B_CELL_NAIVE_30
164.3
B_CELL_NAIVE_31
164.0
B_CELL_NAIVE_32
163.5
B_CELL_NAIVE_33
163.4
B_CELL_NAIVE_34
163.1
B_CELL_NAIVE_35
163.1
B_CELL_NAIVE_36
162.4
B_CELL_NAIVE_37
160.4
B_CELL_NAIVE_38
160.2
B_CELL_NAIVE_39
159.7
B_CELL_NAIVE_40
159.6
B_CELL_NAIVE_41
159.5
B_CELL_NAIVE_42
158.6
B_CELL_NAIVE_43
158.6
B_CELL_NAIVE_44
157.8
B_CELL_NAIVE_45
157.7
B_CELL_NAIVE_46
156.4
B_CELL_NAIVE_47
155.1
B_CELL_NAIVE_48
154.9
B_CELL_NAIVE_49
154.3
B_CELL_NAIVE_50
153.5
B_CELL_NAIVE_51
153.3
B_CELL_NAIVE_52
152.8
B_CELL_NAIVE_53
152.5
B_CELL_NAIVE_54
152.4
B_CELL_NAIVE_55
152.0
B_CELL_NAIVE_56
151.9
B_CELL_NAIVE_57
151.8
B_CELL_NAIVE_58
151.2
B_CELL_NAIVE_59
150.5
B_CELL_NAIVE_60
146.8
B_CELL_NAIVE_61
146.3
B_CELL_NAIVE_62
145.1
B_CELL_NAIVE_63
144.6
B_CELL_NAIVE_64
143.8
B_CELL_NAIVE_65
143.7
B_CELL_NAIVE_66
143.7
B_CELL_NAIVE_67
143.6
B_CELL_NAIVE_68
142.0
B_CELL_NAIVE_69
141.3
B_CELL_NAIVE_70
140.9
B_CELL_NAIVE_71
140.1
B_CELL_NAIVE_72
139.6
B_CELL_NAIVE_73
138.1
B_CELL_NAIVE_74
137.7
B_CELL_NAIVE_75
137.3
B_CELL_NAIVE_76
135.6
B_CELL_NAIVE_77
135.5
B_CELL_NAIVE_78
134.4
B_CELL_NAIVE_79
131.5
B_CELL_NAIVE_80
130.2
B_CELL_NAIVE_81
129.7
B_CELL_NAIVE_82
128.9
B_CELL_NAIVE_83
128.4
B_CELL_NAIVE_84
128.0
B_CELL_NAIVE_85
126.2
B_CELL_NAIVE_86
125.6
B_CELL_NAIVE_87
123.7
B_CELL_NAIVE_88
117.8
B_CELL_NAIVE_89
117.3
B_CELL_NAIVE_90
106.2
B_CELL_NAIVE_91
89.9
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