A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
432.9
nTPM
Monaco:
300.3
nTPM
Schmiedel:
238.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
432.9
HPA sample
nTPM
Classical monocyte nTPM: 432.9
Samples: 6
Max nTPM: 627.3
Min nTPM: 344.4
P10809_1003
367.5
P10809_1020
433.8
P10809_1039
627.3
P10809_1058
344.4
P10809_1080
410.7
P10809_1107
413.9
Intermediate monocyte nTPM: 416.7
Samples: 6
Max nTPM: 550.6
Min nTPM: 268.6
P10809_1004
341.4
P10809_1023
550.6
P10809_1042
470.9
P10809_1061
268.6
P10809_1081
419.0
P10809_1108
449.9
Non-classical monocyte nTPM: 386.2
Samples: 5
Max nTPM: 430.8
Min nTPM: 347.1
P10809_1005
348.2
P10809_1053
428.7
P10809_1072
347.1
P10809_1082
376.2
P10809_1109
430.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
300.3
Monaco sample
nTPM
Classical monocyte nTPM: 262.4
Samples: 4
Max nTPM: 306.3
Min nTPM: 200.0
RHH5313_R3680
266.5
RHH5221_R3593
200.0
RHH5250_R3622
306.3
RHH5279_R3651
276.7
Intermediate monocyte nTPM: 300.3
Samples: 4
Max nTPM: 376.2
Min nTPM: 223.6
RHH5314_R3681
376.2
RHH5222_R3594
281.3
RHH5251_R3623
223.6
RHH5280_R3652
319.9
Non-classical monocyte nTPM: 233.4
Samples: 4
Max nTPM: 276.0
Min nTPM: 194.9
RHH5315_R3682
276.0
RHH5223_R3595
226.0
RHH5252_R3624
194.9
RHH5281_R3653
236.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.9
Schmiedel sample id
TPM
Classical monocyte TPM: 183.7
Samples: 91
Max TPM: 229.1
Min TPM: 156.9
MONOCYTES_1
229.1
MONOCYTES_2
222.9
MONOCYTES_3
212.9
MONOCYTES_4
211.9
MONOCYTES_5
207.0
MONOCYTES_6
203.8
MONOCYTES_7
203.4
MONOCYTES_8
202.6
MONOCYTES_9
200.9
MONOCYTES_10
199.6
MONOCYTES_11
198.6
MONOCYTES_12
197.8
MONOCYTES_13
197.5
MONOCYTES_14
195.9
MONOCYTES_15
195.8
MONOCYTES_16
194.9
MONOCYTES_17
194.2
MONOCYTES_18
194.2
MONOCYTES_19
194.0
MONOCYTES_20
193.7
MONOCYTES_21
193.4
MONOCYTES_22
193.2
MONOCYTES_23
193.2
MONOCYTES_24
190.1
MONOCYTES_25
190.1
MONOCYTES_26
190.1
MONOCYTES_27
190.1
MONOCYTES_28
189.9
MONOCYTES_29
189.7
MONOCYTES_30
189.4
MONOCYTES_31
189.2
MONOCYTES_32
188.6
MONOCYTES_33
188.3
MONOCYTES_34
187.8
MONOCYTES_35
187.8
MONOCYTES_36
187.6
MONOCYTES_37
187.4
MONOCYTES_38
187.1
MONOCYTES_39
187.0
MONOCYTES_40
186.9
MONOCYTES_41
186.9
MONOCYTES_42
186.7
MONOCYTES_43
186.4
MONOCYTES_44
185.9
MONOCYTES_45
183.1
MONOCYTES_46
182.4
MONOCYTES_47
182.0
MONOCYTES_48
181.6
MONOCYTES_49
181.5
MONOCYTES_50
181.4
MONOCYTES_51
181.3
MONOCYTES_52
181.2
MONOCYTES_53
180.9
MONOCYTES_54
180.6
MONOCYTES_55
180.0
MONOCYTES_56
179.1
MONOCYTES_57
178.3
MONOCYTES_58
178.3
MONOCYTES_59
178.2
MONOCYTES_60
177.7
MONOCYTES_61
177.5
MONOCYTES_62
176.7
MONOCYTES_63
176.1
MONOCYTES_64
176.1
MONOCYTES_65
175.8
MONOCYTES_66
175.1
MONOCYTES_67
174.9
MONOCYTES_68
174.6
MONOCYTES_69
173.9
MONOCYTES_70
173.3
MONOCYTES_71
172.8
MONOCYTES_72
171.8
MONOCYTES_73
171.2
MONOCYTES_74
171.2
MONOCYTES_75
170.9
MONOCYTES_76
170.9
MONOCYTES_77
170.1
MONOCYTES_78
169.6
MONOCYTES_79
169.3
MONOCYTES_80
167.7
MONOCYTES_81
167.1
MONOCYTES_82
166.3
MONOCYTES_83
164.2
MONOCYTES_84
163.9
MONOCYTES_85
163.4
MONOCYTES_86
162.8
MONOCYTES_87
162.5
MONOCYTES_88
160.7
MONOCYTES_89
159.4
MONOCYTES_90
158.9
MONOCYTES_91
156.9
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Non-classical monocyte TPM: 238.9
Samples: 90
Max TPM: 303.2
Min TPM: 201.6
M2_1
303.2
M2_2
271.5
M2_3
269.6
M2_4
267.0
M2_5
264.7
M2_6
264.2
M2_7
264.1
M2_8
263.4
M2_9
263.3
M2_10
263.0
M2_11
262.2
M2_12
260.2
M2_13
260.2
M2_14
258.8
M2_15
258.6
M2_16
258.1
M2_17
257.9
M2_18
257.6
M2_19
256.9
M2_20
255.6
M2_21
254.5
M2_22
254.2
M2_23
252.4
M2_24
251.6
M2_25
251.0
M2_26
250.7
M2_27
249.5
M2_28
248.6
M2_29
248.3
M2_30
246.6
M2_31
246.3
M2_32
245.5
M2_33
244.8
M2_34
244.0
M2_35
243.9
M2_36
243.8
M2_37
243.1
M2_38
242.7
M2_39
242.5
M2_40
242.4
M2_41
241.9
M2_42
241.5
M2_43
239.7
M2_44
239.6
M2_45
238.9
M2_46
238.3
M2_47
237.6
M2_48
237.4
M2_49
236.9
M2_50
236.5
M2_51
235.7
M2_52
235.7
M2_53
234.9
M2_54
233.9
M2_55
233.2
M2_56
232.6
M2_57
232.6
M2_58
231.8
M2_59
231.5
M2_60
230.9
M2_61
230.1
M2_62
227.1
M2_63
227.0
M2_64
226.9
M2_65
226.2
M2_66
225.8
M2_67
225.4
M2_68
224.2
M2_69
223.6
M2_70
223.5
M2_71
223.3
M2_72
222.7
M2_73
222.3
M2_74
221.6
M2_75
220.9
M2_76
219.0
M2_77
218.8
M2_78
217.8
M2_79
216.8
M2_80
215.8
M2_81
215.6
M2_82
212.0
M2_83
210.8
M2_84
210.4
M2_85
209.9
M2_86
209.1
M2_87
207.5
M2_88
207.4
M2_89
207.0
M2_90
201.6
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