A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
132.0
nTPM
Monaco:
429.6
nTPM
Schmiedel:
181.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
132.0
HPA sample
nTPM
Memory B-cell nTPM: 132.0
Samples: 6
Max nTPM: 167.6
Min nTPM: 93.0
P10809_1017
113.7
P10809_1025
167.6
P10809_1044
93.0
P10809_1063
138.7
P10809_1092
121.3
P10809_1105
157.8
Naive B-cell nTPM: 129.3
Samples: 6
Max nTPM: 198.2
Min nTPM: 92.7
P10809_1011
94.8
P10809_1029
143.3
P10809_1048
198.2
P10809_1067
92.7
P10809_1091
113.4
P10809_1104
133.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
429.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 415.3
Samples: 4
Max nTPM: 453.0
Min nTPM: 351.0
RHH5310_R3677
351.0
RHH5218_R3590
428.0
RHH5247_R3619
453.0
RHH5276_R3648
429.0
Naive B-cell nTPM: 365.8
Samples: 4
Max nTPM: 389.8
Min nTPM: 320.8
RHH5308_R3675
389.8
RHH5216_R3588
379.2
RHH5245_R3617
320.8
RHH5274_R3646
373.5
Non-switched memory B-cell nTPM: 429.6
Samples: 4
Max nTPM: 452.9
Min nTPM: 393.0
RHH5309_R3676
422.6
RHH5217_R3589
452.9
RHH5246_R3618
449.8
RHH5275_R3647
393.0
Plasmablast nTPM: 33.4
Samples: 4
Max nTPM: 43.6
Min nTPM: 19.3
RHH5312_R3679
31.7
RHH5220_R3592
19.3
RHH5249_R3621
39.1
RHH5278_R3650
43.6
Switched memory B-cell nTPM: 421.1
Samples: 4
Max nTPM: 495.4
Min nTPM: 368.9
RHH5311_R3678
409.6
RHH5219_R3591
410.4
RHH5248_R3620
495.4
RHH5277_R3649
368.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.2
Schmiedel sample id
TPM
Naive B-cell TPM: 181.2
Samples: 91
Max TPM: 282.7
Min TPM: 91.2
B_CELL_NAIVE_1
282.7
B_CELL_NAIVE_2
265.9
B_CELL_NAIVE_3
259.3
B_CELL_NAIVE_4
255.0
B_CELL_NAIVE_5
250.8
B_CELL_NAIVE_6
233.6
B_CELL_NAIVE_7
229.0
B_CELL_NAIVE_8
225.0
B_CELL_NAIVE_9
221.7
B_CELL_NAIVE_10
218.5
B_CELL_NAIVE_11
217.1
B_CELL_NAIVE_12
216.0
B_CELL_NAIVE_13
210.4
B_CELL_NAIVE_14
210.2
B_CELL_NAIVE_15
209.1
B_CELL_NAIVE_16
203.0
B_CELL_NAIVE_17
201.7
B_CELL_NAIVE_18
200.7
B_CELL_NAIVE_19
197.2
B_CELL_NAIVE_20
196.8
B_CELL_NAIVE_21
196.6
B_CELL_NAIVE_22
196.2
B_CELL_NAIVE_23
195.9
B_CELL_NAIVE_24
195.8
B_CELL_NAIVE_25
192.7
B_CELL_NAIVE_26
192.5
B_CELL_NAIVE_27
191.4
B_CELL_NAIVE_28
191.2
B_CELL_NAIVE_29
190.6
B_CELL_NAIVE_30
190.6
B_CELL_NAIVE_31
190.5
B_CELL_NAIVE_32
189.6
B_CELL_NAIVE_33
188.8
B_CELL_NAIVE_34
188.2
B_CELL_NAIVE_35
188.1
B_CELL_NAIVE_36
187.4
B_CELL_NAIVE_37
186.3
B_CELL_NAIVE_38
185.1
B_CELL_NAIVE_39
184.2
B_CELL_NAIVE_40
184.0
B_CELL_NAIVE_41
182.7
B_CELL_NAIVE_42
182.2
B_CELL_NAIVE_43
181.7
B_CELL_NAIVE_44
181.7
B_CELL_NAIVE_45
181.3
B_CELL_NAIVE_46
179.7
B_CELL_NAIVE_47
178.9
B_CELL_NAIVE_48
177.9
B_CELL_NAIVE_49
177.8
B_CELL_NAIVE_50
177.6
B_CELL_NAIVE_51
176.0
B_CELL_NAIVE_52
175.5
B_CELL_NAIVE_53
174.4
B_CELL_NAIVE_54
174.2
B_CELL_NAIVE_55
172.9
B_CELL_NAIVE_56
172.0
B_CELL_NAIVE_57
170.8
B_CELL_NAIVE_58
170.7
B_CELL_NAIVE_59
170.7
B_CELL_NAIVE_60
170.5
B_CELL_NAIVE_61
170.1
B_CELL_NAIVE_62
169.7
B_CELL_NAIVE_63
169.5
B_CELL_NAIVE_64
168.6
B_CELL_NAIVE_65
168.6
B_CELL_NAIVE_66
164.9
B_CELL_NAIVE_67
163.5
B_CELL_NAIVE_68
161.1
B_CELL_NAIVE_69
159.7
B_CELL_NAIVE_70
157.9
B_CELL_NAIVE_71
157.1
B_CELL_NAIVE_72
156.7
B_CELL_NAIVE_73
156.3
B_CELL_NAIVE_74
156.2
B_CELL_NAIVE_75
156.1
B_CELL_NAIVE_76
155.3
B_CELL_NAIVE_77
153.7
B_CELL_NAIVE_78
153.5
B_CELL_NAIVE_79
152.9
B_CELL_NAIVE_80
152.3
B_CELL_NAIVE_81
147.6
B_CELL_NAIVE_82
147.2
B_CELL_NAIVE_83
143.4
B_CELL_NAIVE_84
141.1
B_CELL_NAIVE_85
138.9
B_CELL_NAIVE_86
137.6
B_CELL_NAIVE_87
131.4
B_CELL_NAIVE_88
129.7
B_CELL_NAIVE_89
127.9
B_CELL_NAIVE_90
109.0
B_CELL_NAIVE_91
91.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.