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BETA
  • SUMMARY

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  • BRAIN

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  • SYPL1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:132.0 nTPM
Monaco:429.6 nTPM
Schmiedel:181.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

132.0
HPA sample nTPM
Memory B-cell
nTPM: 132.0
Samples: 6

Max nTPM: 167.6
Min nTPM: 93.0
P10809_1017 113.7
P10809_1025 167.6
P10809_1044 93.0
P10809_1063 138.7
P10809_1092 121.3
P10809_1105 157.8
Naive B-cell
nTPM: 129.3
Samples: 6

Max nTPM: 198.2
Min nTPM: 92.7
P10809_1011 94.8
P10809_1029 143.3
P10809_1048 198.2
P10809_1067 92.7
P10809_1091 113.4
P10809_1104 133.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

429.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 415.3
Samples: 4

Max nTPM: 453.0
Min nTPM: 351.0
RHH5310_R3677 351.0
RHH5218_R3590 428.0
RHH5247_R3619 453.0
RHH5276_R3648 429.0
Naive B-cell
nTPM: 365.8
Samples: 4

Max nTPM: 389.8
Min nTPM: 320.8
RHH5308_R3675 389.8
RHH5216_R3588 379.2
RHH5245_R3617 320.8
RHH5274_R3646 373.5
Non-switched memory B-cell
nTPM: 429.6
Samples: 4

Max nTPM: 452.9
Min nTPM: 393.0
RHH5309_R3676 422.6
RHH5217_R3589 452.9
RHH5246_R3618 449.8
RHH5275_R3647 393.0
Plasmablast
nTPM: 33.4
Samples: 4

Max nTPM: 43.6
Min nTPM: 19.3
RHH5312_R3679 31.7
RHH5220_R3592 19.3
RHH5249_R3621 39.1
RHH5278_R3650 43.6
Switched memory B-cell
nTPM: 421.1
Samples: 4

Max nTPM: 495.4
Min nTPM: 368.9
RHH5311_R3678 409.6
RHH5219_R3591 410.4
RHH5248_R3620 495.4
RHH5277_R3649 368.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

181.2
Schmiedel sample id TPM
Naive B-cell
TPM: 181.2
Samples: 91

Max TPM: 282.7
Min TPM: 91.2
B_CELL_NAIVE_1 282.7
B_CELL_NAIVE_2 265.9
B_CELL_NAIVE_3 259.3
B_CELL_NAIVE_4 255.0
B_CELL_NAIVE_5 250.8
B_CELL_NAIVE_6 233.6
B_CELL_NAIVE_7 229.0
B_CELL_NAIVE_8 225.0
B_CELL_NAIVE_9 221.7
B_CELL_NAIVE_10 218.5
B_CELL_NAIVE_11 217.1
B_CELL_NAIVE_12 216.0
B_CELL_NAIVE_13 210.4
B_CELL_NAIVE_14 210.2
B_CELL_NAIVE_15 209.1
B_CELL_NAIVE_16 203.0
B_CELL_NAIVE_17 201.7
B_CELL_NAIVE_18 200.7
B_CELL_NAIVE_19 197.2
B_CELL_NAIVE_20 196.8
B_CELL_NAIVE_21 196.6
B_CELL_NAIVE_22 196.2
B_CELL_NAIVE_23 195.9
B_CELL_NAIVE_24 195.8
B_CELL_NAIVE_25 192.7
B_CELL_NAIVE_26 192.5
B_CELL_NAIVE_27 191.4
B_CELL_NAIVE_28 191.2
B_CELL_NAIVE_29 190.6
B_CELL_NAIVE_30 190.6
B_CELL_NAIVE_31 190.5
B_CELL_NAIVE_32 189.6
B_CELL_NAIVE_33 188.8
B_CELL_NAIVE_34 188.2
B_CELL_NAIVE_35 188.1
B_CELL_NAIVE_36 187.4
B_CELL_NAIVE_37 186.3
B_CELL_NAIVE_38 185.1
B_CELL_NAIVE_39 184.2
B_CELL_NAIVE_40 184.0
B_CELL_NAIVE_41 182.7
B_CELL_NAIVE_42 182.2
B_CELL_NAIVE_43 181.7
B_CELL_NAIVE_44 181.7
B_CELL_NAIVE_45 181.3
B_CELL_NAIVE_46 179.7
B_CELL_NAIVE_47 178.9
B_CELL_NAIVE_48 177.9
B_CELL_NAIVE_49 177.8
B_CELL_NAIVE_50 177.6
B_CELL_NAIVE_51 176.0
B_CELL_NAIVE_52 175.5
B_CELL_NAIVE_53 174.4
B_CELL_NAIVE_54 174.2
B_CELL_NAIVE_55 172.9
B_CELL_NAIVE_56 172.0
B_CELL_NAIVE_57 170.8
B_CELL_NAIVE_58 170.7
B_CELL_NAIVE_59 170.7
B_CELL_NAIVE_60 170.5
B_CELL_NAIVE_61 170.1
B_CELL_NAIVE_62 169.7
B_CELL_NAIVE_63 169.5
B_CELL_NAIVE_64 168.6
B_CELL_NAIVE_65 168.6
B_CELL_NAIVE_66 164.9
B_CELL_NAIVE_67 163.5
B_CELL_NAIVE_68 161.1
B_CELL_NAIVE_69 159.7
B_CELL_NAIVE_70 157.9
B_CELL_NAIVE_71 157.1
B_CELL_NAIVE_72 156.7
B_CELL_NAIVE_73 156.3
B_CELL_NAIVE_74 156.2
B_CELL_NAIVE_75 156.1
B_CELL_NAIVE_76 155.3
B_CELL_NAIVE_77 153.7
B_CELL_NAIVE_78 153.5
B_CELL_NAIVE_79 152.9
B_CELL_NAIVE_80 152.3
B_CELL_NAIVE_81 147.6
B_CELL_NAIVE_82 147.2
B_CELL_NAIVE_83 143.4
B_CELL_NAIVE_84 141.1
B_CELL_NAIVE_85 138.9
B_CELL_NAIVE_86 137.6
B_CELL_NAIVE_87 131.4
B_CELL_NAIVE_88 129.7
B_CELL_NAIVE_89 127.9
B_CELL_NAIVE_90 109.0
B_CELL_NAIVE_91 91.2
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