A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.7
nTPM
Monaco:
180.8
nTPM
Schmiedel:
77.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.7
HPA sample
nTPM
Classical monocyte nTPM: 40.7
Samples: 6
Max nTPM: 50.8
Min nTPM: 32.8
P10809_1003
42.0
P10809_1020
50.8
P10809_1039
46.0
P10809_1058
32.8
P10809_1080
37.0
P10809_1107
35.4
Intermediate monocyte nTPM: 38.3
Samples: 6
Max nTPM: 44.8
Min nTPM: 25.8
P10809_1004
25.8
P10809_1023
44.8
P10809_1042
34.6
P10809_1061
42.0
P10809_1081
41.2
P10809_1108
41.3
Non-classical monocyte nTPM: 31.2
Samples: 5
Max nTPM: 37.1
Min nTPM: 27.3
P10809_1005
29.3
P10809_1053
37.1
P10809_1072
27.3
P10809_1082
30.4
P10809_1109
31.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
180.8
Monaco sample
nTPM
Classical monocyte nTPM: 180.8
Samples: 4
Max nTPM: 202.6
Min nTPM: 164.2
RHH5313_R3680
182.7
RHH5221_R3593
202.6
RHH5250_R3622
173.7
RHH5279_R3651
164.2
Intermediate monocyte nTPM: 153.1
Samples: 4
Max nTPM: 162.2
Min nTPM: 137.7
RHH5314_R3681
162.2
RHH5222_R3594
152.1
RHH5251_R3623
137.7
RHH5280_R3652
160.5
Non-classical monocyte nTPM: 121.1
Samples: 4
Max nTPM: 131.8
Min nTPM: 112.8
RHH5315_R3682
119.1
RHH5223_R3595
112.8
RHH5252_R3624
131.8
RHH5281_R3653
120.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.1
Schmiedel sample id
TPM
Classical monocyte TPM: 64.1
Samples: 91
Max TPM: 92.2
Min TPM: 45.1
MONOCYTES_1
92.2
MONOCYTES_2
82.0
MONOCYTES_3
81.2
MONOCYTES_4
80.3
MONOCYTES_5
79.9
MONOCYTES_6
79.6
MONOCYTES_7
79.2
MONOCYTES_8
79.2
MONOCYTES_9
79.1
MONOCYTES_10
78.5
MONOCYTES_11
77.7
MONOCYTES_12
76.9
MONOCYTES_13
75.8
MONOCYTES_14
75.5
MONOCYTES_15
75.0
MONOCYTES_16
73.7
MONOCYTES_17
73.4
MONOCYTES_18
73.2
MONOCYTES_19
72.4
MONOCYTES_20
72.2
MONOCYTES_21
71.8
MONOCYTES_22
71.6
MONOCYTES_23
70.4
MONOCYTES_24
70.2
MONOCYTES_25
70.1
MONOCYTES_26
70.1
MONOCYTES_27
70.0
MONOCYTES_28
69.4
MONOCYTES_29
69.3
MONOCYTES_30
69.0
MONOCYTES_31
68.5
MONOCYTES_32
68.1
MONOCYTES_33
66.7
MONOCYTES_34
66.2
MONOCYTES_35
65.9
MONOCYTES_36
65.8
MONOCYTES_37
65.7
MONOCYTES_38
65.7
MONOCYTES_39
65.5
MONOCYTES_40
65.5
MONOCYTES_41
65.4
MONOCYTES_42
64.7
MONOCYTES_43
64.6
MONOCYTES_44
64.3
MONOCYTES_45
63.9
MONOCYTES_46
63.7
MONOCYTES_47
63.6
MONOCYTES_48
63.4
MONOCYTES_49
63.1
MONOCYTES_50
63.0
MONOCYTES_51
62.1
MONOCYTES_52
62.0
MONOCYTES_53
60.9
MONOCYTES_54
60.5
MONOCYTES_55
59.8
MONOCYTES_56
59.6
MONOCYTES_57
59.1
MONOCYTES_58
59.0
MONOCYTES_59
59.0
MONOCYTES_60
58.6
MONOCYTES_61
58.5
MONOCYTES_62
58.5
MONOCYTES_63
58.5
MONOCYTES_64
58.4
MONOCYTES_65
58.3
MONOCYTES_66
57.8
MONOCYTES_67
57.6
MONOCYTES_68
57.5
MONOCYTES_69
57.3
MONOCYTES_70
57.0
MONOCYTES_71
55.3
MONOCYTES_72
55.3
MONOCYTES_73
55.0
MONOCYTES_74
54.3
MONOCYTES_75
54.2
MONOCYTES_76
54.2
MONOCYTES_77
54.0
MONOCYTES_78
53.1
MONOCYTES_79
52.7
MONOCYTES_80
52.6
MONOCYTES_81
52.0
MONOCYTES_82
51.6
MONOCYTES_83
51.4
MONOCYTES_84
50.8
MONOCYTES_85
50.6
MONOCYTES_86
50.6
MONOCYTES_87
50.2
MONOCYTES_88
49.9
MONOCYTES_89
49.6
MONOCYTES_90
48.3
MONOCYTES_91
45.1
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Non-classical monocyte TPM: 77.1
Samples: 90
Max TPM: 120.7
Min TPM: 36.4
M2_1
120.7
M2_2
117.8
M2_3
108.0
M2_4
101.6
M2_5
98.4
M2_6
97.7
M2_7
97.0
M2_8
97.0
M2_9
95.9
M2_10
94.8
M2_11
93.6
M2_12
92.3
M2_13
92.1
M2_14
91.0
M2_15
90.7
M2_16
89.5
M2_17
89.0
M2_18
86.2
M2_19
86.1
M2_20
85.8
M2_21
85.6
M2_22
85.1
M2_23
84.5
M2_24
84.4
M2_25
84.0
M2_26
83.3
M2_27
82.4
M2_28
81.7
M2_29
81.1
M2_30
80.5
M2_31
80.3
M2_32
80.2
M2_33
79.9
M2_34
79.8
M2_35
79.4
M2_36
78.6
M2_37
78.5
M2_38
77.6
M2_39
77.6
M2_40
76.7
M2_41
76.6
M2_42
76.6
M2_43
76.6
M2_44
76.2
M2_45
75.6
M2_46
75.3
M2_47
75.2
M2_48
74.8
M2_49
74.7
M2_50
74.1
M2_51
74.0
M2_52
73.7
M2_53
73.5
M2_54
73.5
M2_55
73.0
M2_56
72.9
M2_57
72.4
M2_58
71.9
M2_59
71.4
M2_60
71.2
M2_61
70.4
M2_62
69.7
M2_63
69.4
M2_64
68.9
M2_65
68.3
M2_66
68.2
M2_67
67.5
M2_68
67.3
M2_69
67.0
M2_70
66.5
M2_71
66.4
M2_72
66.3
M2_73
66.2
M2_74
65.4
M2_75
65.3
M2_76
65.2
M2_77
63.9
M2_78
63.2
M2_79
63.0
M2_80
62.8
M2_81
62.4
M2_82
62.4
M2_83
62.1
M2_84
62.1
M2_85
62.0
M2_86
59.6
M2_87
57.3
M2_88
55.5
M2_89
54.8
M2_90
36.4
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