A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
120.7
nTPM
Monaco:
36.9
nTPM
Schmiedel:
57.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.7
HPA sample
nTPM
Memory B-cell nTPM: 120.7
Samples: 6
Max nTPM: 181.2
Min nTPM: 79.0
P10809_1017
79.0
P10809_1025
111.5
P10809_1044
181.2
P10809_1063
124.7
P10809_1092
127.0
P10809_1105
101.0
Naive B-cell nTPM: 104.8
Samples: 6
Max nTPM: 185.5
Min nTPM: 50.5
P10809_1011
50.5
P10809_1029
77.6
P10809_1048
185.5
P10809_1067
101.3
P10809_1091
100.6
P10809_1104
113.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 36.9
Samples: 4
Max nTPM: 71.7
Min nTPM: 16.0
RHH5310_R3677
33.7
RHH5218_R3590
16.0
RHH5247_R3619
71.7
RHH5276_R3648
26.1
Naive B-cell nTPM: 24.7
Samples: 4
Max nTPM: 30.7
Min nTPM: 18.9
RHH5308_R3675
30.7
RHH5216_R3588
22.0
RHH5245_R3617
27.1
RHH5274_R3646
18.9
Non-switched memory B-cell nTPM: 29.8
Samples: 4
Max nTPM: 38.5
Min nTPM: 23.0
RHH5309_R3676
38.5
RHH5217_R3589
23.0
RHH5246_R3618
34.3
RHH5275_R3647
23.5
Plasmablast nTPM: 36.1
Samples: 4
Max nTPM: 42.9
Min nTPM: 31.9
RHH5312_R3679
37.0
RHH5220_R3592
32.7
RHH5249_R3621
42.9
RHH5278_R3650
31.9
Switched memory B-cell nTPM: 34.9
Samples: 4
Max nTPM: 53.3
Min nTPM: 20.1
RHH5311_R3678
53.3
RHH5219_R3591
40.4
RHH5248_R3620
20.1
RHH5277_R3649
25.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.7
Schmiedel sample id
TPM
Naive B-cell TPM: 57.7
Samples: 91
Max TPM: 114.2
Min TPM: 19.3
B_CELL_NAIVE_1
114.2
B_CELL_NAIVE_2
91.1
B_CELL_NAIVE_3
90.2
B_CELL_NAIVE_4
89.9
B_CELL_NAIVE_5
83.7
B_CELL_NAIVE_6
83.2
B_CELL_NAIVE_7
80.9
B_CELL_NAIVE_8
77.9
B_CELL_NAIVE_9
76.5
B_CELL_NAIVE_10
74.7
B_CELL_NAIVE_11
71.8
B_CELL_NAIVE_12
71.6
B_CELL_NAIVE_13
71.2
B_CELL_NAIVE_14
69.9
B_CELL_NAIVE_15
69.0
B_CELL_NAIVE_16
68.8
B_CELL_NAIVE_17
67.1
B_CELL_NAIVE_18
66.8
B_CELL_NAIVE_19
64.5
B_CELL_NAIVE_20
63.5
B_CELL_NAIVE_21
63.1
B_CELL_NAIVE_22
62.5
B_CELL_NAIVE_23
62.4
B_CELL_NAIVE_24
62.4
B_CELL_NAIVE_25
61.8
B_CELL_NAIVE_26
61.6
B_CELL_NAIVE_27
61.5
B_CELL_NAIVE_28
61.4
B_CELL_NAIVE_29
60.7
B_CELL_NAIVE_30
60.4
B_CELL_NAIVE_31
60.4
B_CELL_NAIVE_32
60.0
B_CELL_NAIVE_33
59.8
B_CELL_NAIVE_34
59.8
B_CELL_NAIVE_35
59.7
B_CELL_NAIVE_36
59.4
B_CELL_NAIVE_37
59.3
B_CELL_NAIVE_38
59.0
B_CELL_NAIVE_39
58.9
B_CELL_NAIVE_40
58.8
B_CELL_NAIVE_41
58.4
B_CELL_NAIVE_42
58.4
B_CELL_NAIVE_43
58.1
B_CELL_NAIVE_44
57.8
B_CELL_NAIVE_45
56.4
B_CELL_NAIVE_46
55.7
B_CELL_NAIVE_47
55.3
B_CELL_NAIVE_48
55.2
B_CELL_NAIVE_49
55.1
B_CELL_NAIVE_50
55.0
B_CELL_NAIVE_51
54.9
B_CELL_NAIVE_52
54.7
B_CELL_NAIVE_53
54.4
B_CELL_NAIVE_54
53.7
B_CELL_NAIVE_55
53.2
B_CELL_NAIVE_56
53.1
B_CELL_NAIVE_57
52.8
B_CELL_NAIVE_58
51.8
B_CELL_NAIVE_59
51.3
B_CELL_NAIVE_60
51.2
B_CELL_NAIVE_61
50.3
B_CELL_NAIVE_62
50.2
B_CELL_NAIVE_63
50.1
B_CELL_NAIVE_64
50.0
B_CELL_NAIVE_65
50.0
B_CELL_NAIVE_66
49.4
B_CELL_NAIVE_67
49.0
B_CELL_NAIVE_68
48.5
B_CELL_NAIVE_69
48.0
B_CELL_NAIVE_70
48.0
B_CELL_NAIVE_71
47.9
B_CELL_NAIVE_72
47.6
B_CELL_NAIVE_73
47.4
B_CELL_NAIVE_74
47.3
B_CELL_NAIVE_75
46.9
B_CELL_NAIVE_76
46.9
B_CELL_NAIVE_77
46.0
B_CELL_NAIVE_78
45.1
B_CELL_NAIVE_79
45.0
B_CELL_NAIVE_80
44.7
B_CELL_NAIVE_81
44.4
B_CELL_NAIVE_82
44.3
B_CELL_NAIVE_83
43.6
B_CELL_NAIVE_84
43.4
B_CELL_NAIVE_85
42.8
B_CELL_NAIVE_86
41.6
B_CELL_NAIVE_87
39.6
B_CELL_NAIVE_88
38.8
B_CELL_NAIVE_89
38.2
B_CELL_NAIVE_90
37.9
B_CELL_NAIVE_91
19.3
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The Human Protein Atlas project is funded
