A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
66.1
nTPM
Monaco:
20.8
nTPM
Schmiedel:
39.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.1
HPA sample
nTPM
Classical monocyte nTPM: 56.6
Samples: 6
Max nTPM: 67.9
Min nTPM: 34.8
P10809_1003
34.8
P10809_1020
62.0
P10809_1039
67.9
P10809_1058
57.9
P10809_1080
56.4
P10809_1107
60.4
Intermediate monocyte nTPM: 66.1
Samples: 6
Max nTPM: 80.4
Min nTPM: 45.6
P10809_1004
45.6
P10809_1023
67.6
P10809_1042
80.4
P10809_1061
64.8
P10809_1081
64.7
P10809_1108
73.5
Non-classical monocyte nTPM: 51.1
Samples: 5
Max nTPM: 72.6
Min nTPM: 33.0
P10809_1005
39.3
P10809_1053
53.8
P10809_1072
33.0
P10809_1082
56.6
P10809_1109
72.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
Monaco sample
nTPM
Classical monocyte nTPM: 18.2
Samples: 4
Max nTPM: 20.9
Min nTPM: 14.7
RHH5313_R3680
20.9
RHH5221_R3593
14.7
RHH5250_R3622
18.4
RHH5279_R3651
18.8
Intermediate monocyte nTPM: 20.9
Samples: 4
Max nTPM: 22.5
Min nTPM: 20.1
RHH5314_R3681
22.5
RHH5222_R3594
20.1
RHH5251_R3623
20.2
RHH5280_R3652
20.6
Non-classical monocyte nTPM: 15.6
Samples: 4
Max nTPM: 21.8
Min nTPM: 10.2
RHH5315_R3682
21.8
RHH5223_R3595
18.2
RHH5252_R3624
10.2
RHH5281_R3653
12.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.6
Schmiedel sample id
TPM
Classical monocyte TPM: 38.4
Samples: 91
Max TPM: 51.1
Min TPM: 27.6
MONOCYTES_1
51.1
MONOCYTES_2
50.0
MONOCYTES_3
47.9
MONOCYTES_4
47.6
MONOCYTES_5
46.0
MONOCYTES_6
45.4
MONOCYTES_7
44.8
MONOCYTES_8
44.5
MONOCYTES_9
43.9
MONOCYTES_10
43.4
MONOCYTES_11
43.3
MONOCYTES_12
43.3
MONOCYTES_13
43.1
MONOCYTES_14
43.0
MONOCYTES_15
43.0
MONOCYTES_16
42.9
MONOCYTES_17
42.3
MONOCYTES_18
42.2
MONOCYTES_19
42.2
MONOCYTES_20
42.2
MONOCYTES_21
42.2
MONOCYTES_22
41.9
MONOCYTES_23
41.9
MONOCYTES_24
41.8
MONOCYTES_25
41.8
MONOCYTES_26
41.8
MONOCYTES_27
41.7
MONOCYTES_28
41.7
MONOCYTES_29
41.5
MONOCYTES_30
41.5
MONOCYTES_31
41.3
MONOCYTES_32
41.3
MONOCYTES_33
41.1
MONOCYTES_34
40.8
MONOCYTES_35
40.7
MONOCYTES_36
40.7
MONOCYTES_37
39.9
MONOCYTES_38
39.6
MONOCYTES_39
39.6
MONOCYTES_40
39.5
MONOCYTES_41
39.5
MONOCYTES_42
39.3
MONOCYTES_43
39.2
MONOCYTES_44
39.0
MONOCYTES_45
38.9
MONOCYTES_46
38.7
MONOCYTES_47
38.4
MONOCYTES_48
38.2
MONOCYTES_49
38.1
MONOCYTES_50
38.1
MONOCYTES_51
38.0
MONOCYTES_52
37.6
MONOCYTES_53
37.5
MONOCYTES_54
37.5
MONOCYTES_55
37.5
MONOCYTES_56
37.4
MONOCYTES_57
37.0
MONOCYTES_58
36.2
MONOCYTES_59
36.1
MONOCYTES_60
36.0
MONOCYTES_61
35.8
MONOCYTES_62
35.6
MONOCYTES_63
35.4
MONOCYTES_64
35.4
MONOCYTES_65
35.4
MONOCYTES_66
35.4
MONOCYTES_67
35.2
MONOCYTES_68
35.0
MONOCYTES_69
35.0
MONOCYTES_70
34.8
MONOCYTES_71
34.7
MONOCYTES_72
34.7
MONOCYTES_73
34.2
MONOCYTES_74
34.0
MONOCYTES_75
34.0
MONOCYTES_76
33.9
MONOCYTES_77
33.7
MONOCYTES_78
33.4
MONOCYTES_79
33.3
MONOCYTES_80
33.2
MONOCYTES_81
32.7
MONOCYTES_82
32.4
MONOCYTES_83
32.2
MONOCYTES_84
32.1
MONOCYTES_85
31.6
MONOCYTES_86
29.4
MONOCYTES_87
29.3
MONOCYTES_88
29.1
MONOCYTES_89
28.9
MONOCYTES_90
28.3
MONOCYTES_91
27.6
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Non-classical monocyte TPM: 39.6
Samples: 90
Max TPM: 52.7
Min TPM: 28.1
M2_1
52.7
M2_2
50.5
M2_3
49.8
M2_4
48.1
M2_5
48.1
M2_6
46.9
M2_7
46.1
M2_8
46.0
M2_9
45.9
M2_10
45.7
M2_11
45.5
M2_12
45.1
M2_13
44.8
M2_14
44.8
M2_15
44.7
M2_16
44.4
M2_17
43.8
M2_18
43.8
M2_19
43.8
M2_20
43.7
M2_21
43.4
M2_22
43.2
M2_23
43.0
M2_24
43.0
M2_25
42.7
M2_26
42.6
M2_27
42.6
M2_28
42.5
M2_29
42.1
M2_30
41.7
M2_31
41.5
M2_32
41.1
M2_33
41.0
M2_34
41.0
M2_35
40.9
M2_36
40.7
M2_37
40.6
M2_38
40.6
M2_39
40.5
M2_40
40.0
M2_41
39.9
M2_42
39.7
M2_43
39.4
M2_44
39.4
M2_45
39.4
M2_46
39.3
M2_47
39.3
M2_48
39.2
M2_49
39.1
M2_50
39.0
M2_51
39.0
M2_52
38.9
M2_53
38.5
M2_54
38.4
M2_55
38.2
M2_56
38.1
M2_57
37.9
M2_58
37.9
M2_59
37.7
M2_60
37.6
M2_61
37.4
M2_62
37.3
M2_63
37.3
M2_64
36.5
M2_65
36.5
M2_66
36.4
M2_67
36.4
M2_68
35.9
M2_69
35.9
M2_70
35.8
M2_71
35.7
M2_72
35.6
M2_73
35.5
M2_74
35.4
M2_75
35.2
M2_76
35.0
M2_77
34.8
M2_78
34.6
M2_79
34.2
M2_80
34.1
M2_81
33.8
M2_82
32.9
M2_83
32.6
M2_84
32.6
M2_85
31.9
M2_86
31.2
M2_87
30.8
M2_88
30.6
M2_89
28.7
M2_90
28.1
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