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RPS20
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • RPS20
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1168.4 nTPM
FANTOM5:351.4 Scaled Tags Per Million
Pig:509.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003570
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1168.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1168.4
Samples: 300

Max nTPM: 3750.3
Min nTPM: 565.0
Std nTPM: 397.8
Median nTPM: 1089.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3750.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 3127.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2879.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2541.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2445.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2419.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2313.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2304.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2162.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2153.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2057.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 2007.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1989.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1924.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1833.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1828.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1826.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1804.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1759.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1736.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1713.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1710.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1708.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1703.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1691.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1666.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1632.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1630.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1629.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1605.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1582.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1568.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1567.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1562.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1555.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1552.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1536.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1525.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1518.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1513.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1500.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1478.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1468.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1446.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1444.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1438.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1435.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1430.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1416.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1414.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1400.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1398.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1396.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1394.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1394.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1391.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1389.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1388.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1386.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1381.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1377.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1368.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1365.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1364.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1356.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1353.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1352.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1347.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1344.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1342.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1337.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1335.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1330.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1326.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1322.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1322.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1321.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1317.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1312.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1304.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1303.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1290.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1285.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1284.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1281.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1280.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1278.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1274.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1274.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1268.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1261.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1260.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1257.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1253.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1252.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1246.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1243.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1243.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1243.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1239.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1233.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1232.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1228.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1228.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1227.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1216.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1212.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1212.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1204.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1204.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1196.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1194.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1192.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1192.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1191.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1181.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1181.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1180.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1180.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1178.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1176.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1175.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1174.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1168.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1163.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1161.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1158.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1156.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1156.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1153.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1152.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1145.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1143.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1138.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1131.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1122.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1121.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1121.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1120.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1118.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1114.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1112.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1109.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1108.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1107.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1106.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1102.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1101.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1100.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1090.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1089.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1087.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1085.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1084.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1083.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1082.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1077.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1075.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1073.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1072.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1072.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1067.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1064.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1061.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1056.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1054.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1052.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1050.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1041.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1039.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1038.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1037.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1036.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1031.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1031.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1028.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1028.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1025.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1025.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1022.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1021.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1019.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1018.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1015.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1004.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1004.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1002.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1002.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1002.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 992.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 991.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 986.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 985.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 975.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 973.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 971.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 969.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 968.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 966.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 966.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 965.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 963.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 962.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 960.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 960.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 959.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 956.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 955.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 951.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 950.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 947.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 940.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 940.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 937.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 934.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 929.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 922.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 921.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 920.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 920.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 920.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 919.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 919.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 918.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 917.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 913.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 909.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 905.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 902.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 900.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 900.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 899.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 897.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 896.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 894.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 891.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 886.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 886.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 881.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 876.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 875.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 873.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 869.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 869.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 865.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 861.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 861.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 856.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 855.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 853.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 846.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 843.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 842.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 842.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 841.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 839.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 831.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 826.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 825.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 824.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 823.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 822.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 821.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 818.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 816.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 804.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 795.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 794.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 793.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 791.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 785.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 782.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 779.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 778.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 775.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 771.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 756.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 748.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 743.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 742.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 740.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 736.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 729.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 725.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 718.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 716.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 709.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 702.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 700.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 698.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 692.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 683.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 683.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 674.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 668.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 664.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 646.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 618.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 602.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 565.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

351.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 351.4
FF:10164-103B2 76 years, female 351.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

509.7
Pig sample Sample description nTPM
Caudate
nTPM: 509.7
Samples: 4

Max nTPM: 598.5
Min nTPM: 399.9
Sample A Female 506.9
Sample B Female 533.5
Sample C Male 598.5
Sample D Male 399.9

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