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RPS20
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  • RPS20
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2000.4 nTPM
HPA:1004.9 nTPM
GTEx:2000.4 nTPM
FANTOM5:577.1 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003570
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1004.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1166.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 960.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1000.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 892.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2000.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2000.4
Samples: 207

Max nTPM: 4790.5
Min nTPM: 842.1
Std nTPM: 746.8
Median nTPM: 1876.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4790.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4723.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4538.3
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 4435.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4218.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3814.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3797.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3668.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3495.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3467.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3443.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3367.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3357.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3344.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3263.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3185.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3135.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 3115.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3098.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2949.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2892.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2857.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2853.4
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 2837.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2818.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2817.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2760.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2734.7
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 2716.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2706.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2690.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2647.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2625.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2564.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2523.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2518.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2517.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2486.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2486.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2486.0
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 2469.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2465.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2464.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2457.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2451.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2432.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2430.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2430.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 2417.2
GTEX-1192X-2526-SM-59868 50-59 years, male 2403.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2369.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2366.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2360.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2352.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2344.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2331.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 2325.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 2322.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2322.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2312.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2291.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2286.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2284.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2282.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2281.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2274.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2234.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 2216.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2206.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2205.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2204.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2195.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2194.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2171.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2165.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2164.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2155.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2150.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2122.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2115.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2101.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2097.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2095.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2080.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2073.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2055.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2029.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 2029.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2026.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2025.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2014.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2012.8
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1987.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1986.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1974.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1955.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1952.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1937.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1927.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1916.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1903.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1881.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1877.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1876.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1873.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1871.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1842.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1840.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1834.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1824.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1812.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1808.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1782.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1765.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1761.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1754.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1747.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1745.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1737.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1711.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1711.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1707.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1704.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1700.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1692.1
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1689.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1675.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1672.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1671.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1654.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1647.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1647.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1646.8
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1608.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1604.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1592.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1592.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1583.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1580.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1578.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1573.0
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1562.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1557.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1557.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1551.5
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1540.3
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1539.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1531.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1522.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1515.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1504.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1489.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1487.6
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1480.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1471.2
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1431.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1427.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1424.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1402.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1393.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1389.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1383.9
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1381.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1381.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1379.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1363.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1354.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1337.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1331.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1312.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1304.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1296.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 1292.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1290.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1287.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1281.4
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1274.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1268.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1249.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1243.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1242.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1241.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1224.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1220.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1210.9
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1209.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1197.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 1173.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1151.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1147.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1146.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1114.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1089.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1062.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1058.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1050.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1049.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1043.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1038.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1036.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1020.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 995.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 991.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 979.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 950.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 950.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 842.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

577.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 577.1
FF:10024-101D6 15,40,85 years, mixed 577.1

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