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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:598.4 nTPM
GTEx:598.4 nTPM
FANTOM5:457.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 598.4
Samples: 105

Max nTPM: 889.1
Min nTPM: 365.2
Std nTPM: 108.0
Median nTPM:
354_1 81 years, female 889.1
394_1 75 years, female 858.0
404_1 82 years, female 835.6
153_1 70 years, female 827.8
139_1 64 years, female 808.4
375_1 74 years, female 805.6
379_1 60 years, male 802.4
452_1 88 years, female 770.8
237_1 82 years, male 758.6
251_1 78 years, male 757.2
120_1 70 years, female 736.8
217_1 76 years, male 729.5
81_1 67 years, male 723.9
353_1 82 years, female 718.9
413_1 59 years, female 717.7
2_1 77 years, female 715.2
349_1 83 years, male 712.4
377_1 82 years, female 701.2
162_1 79 years, female 694.6
517_1 88 years, male 680.8
311_1 78 years, male 671.6
384_1 83 years, male 671.1
265_1 87 years, male 669.3
35_1 74 years, female 669.0
499_1 55 years, female 660.5
491_1 89 years, female 657.5
307_1 66 years, female 655.9
526_1 61 years, male 655.8
518_1 75 years, female 653.1
99_1 64 years, male 652.8
17_1 71 years, male 649.4
466_1 57 years, female 649.1
495_1 57 years, female 644.4
142_1 61 years, female 644.2
501_1 88 years, male 643.4
295_1 61 years, female 643.0
254_1 77 years, female 640.4
352_1 62 years, male 640.3
145_1 84 years, male 637.3
18_1 88 years, male 633.9
173_1 67 years, male 632.8
348_1 84 years, male 632.3
389_1 86 years, female 629.8
119_1 70 years, female 624.2
351_1 91 years, male 622.0
322_1 76 years, male 619.9
320_1 89 years, female 618.4
376_1 75 years, female 617.5
319_1 81 years, male 617.1
4_1 88 years, female 606.9
356_1 87 years, female 605.8
355_1 70 years, female 601.6
218_1 71 years, female 591.6
396_1 62 years, male 588.5
246_1 77 years, male 588.1
506_1 65 years, male 586.0
42_1 85 years, male 584.2
117_1 61 years, male 579.3
189_1 76 years, male 576.5
315_1 62 years, female 576.0
115_1 83 years, male 572.4
163_1 78 years, male 571.0
425_1 59 years, female 570.3
292_1 71 years, male 564.7
447_1 81 years, male 559.6
43_1 64 years, female 558.2
317_1 60 years, male 554.8
321_1 62 years, female 548.1
414_1 84 years, female 546.3
41_1 94 years, female 542.4
347_1 72 years, male 539.5
89_1 63 years, male 536.5
316_1 62 years, male 536.5
405_1 91 years, male 534.7
137_1 83 years, male 530.6
415_1 77 years, female 524.5
6_1 73 years, female 521.6
293_1 68 years, female 518.9
313_1 79 years, female 518.3
126_1 63 years, male 513.2
406_1 79 years, male 512.8
308_1 70 years, female 506.4
109_1 81 years, female 504.3
503_1 68 years, male 501.8
243_1 75 years, male 496.9
386_1 76 years, male 496.4
490_1 67 years, female 494.3
177_1 74 years, male 483.3
318_1 68 years, male 482.8
468_1 89 years, male 479.4
291_1 76 years, male 477.2
264_1 73 years, female 475.0
286_1 68 years, female 473.1
229_1 69 years, female 473.0
350_1 84 years, female 459.3
9_1 66 years, female 459.0
480_1 63 years, male 450.2
266_1 85 years, male 446.8
335_1 73 years, female 444.5
324_1 76 years, male 437.3
149_1 88 years, male 434.8
172_1 72 years, female 425.4
288_1 66 years, female 408.1
32_1 67 years, male 403.4
314_1 67 years, male 365.2
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

457.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 457.5
FF:10030-101E3 24-65 years, mixed 457.5

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