HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:1261.9 nTPM
HPA Brain:361.1 nTPM
GTEx:1261.9 nTPM
FANTOM5:305.4 Scaled Tags Per Million
Pig:799.4 nTPM
Mouse:29.2 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003570
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 361.1
Sample id Sample description nTPM
Hippocampus
nTPM: 356.6
1898 Male, age 80, left hemisphere 409.0
2529 Female, age 94, left hemisphere 408.3
1855 Male, age 76, left hemisphere 363.9
2621 Female, age 67, right hemisphere 337.8
1911 Female, age 85, right hemisphere 327.5
2148 Female, age 91, left hemisphere 292.9
Dentate gyrus
nTPM: 346.8
2530 Female, age 94, left hemisphere 449.7
2010 Male, age 76, both hemispheres 427.9
2528 Male, age 74, both hemispheres 315.7
2531 Female, age 67, both hemispheres 305.6
2246 Female, age 85, both hemispheres 300.1
1927 Female, age 91, both hemispheres 281.6
Entorhinal gyrus
nTPM: 347.1
2686 Male, age 75, right hemisphere 383.8
2117 Female, age 91, right hemisphere 381.1
1787 Male, age 76, left hemisphere 374.1
2764 Male, age 80, right hemisphere 348.5
1938 Female, age 85, left hemisphere 317.7
2613 Female, age 94, left hemisphere 277.7
Hippocampus, CA1
nTPM: 330.8
2045 Male, age 76, both hemispheres 378.6
2749 Male, age 80, left hemisphere 331.1
2082 Female, age 91, right hemisphere 330.2
1873 Female, age 85, both hemispheres 316.2
2527 Male, age 74, both hemispheres 298.2
Hippocampus, CA2
nTPM: 361.1
1963 Male, age 80, left hemisphere 470.0
1892 Male, age 76, both hemispheres 360.1
1940 Female, age 85, left hemisphere 339.8
2437 Female, age 94, left hemisphere 339.6
2113 Female, age 91, right hemisphere 333.1
2249 Male, age 74, both hemispheres 323.8
Hippocampus, CA3
nTPM: 309.1
1867 Male, age 76, both hemispheres 425.0
1891 Female, age 85, both hemispheres 346.5
2436 Male, age 74, both hemispheres 297.6
2861 Female, age 67, both hemispheres 292.4
2137 Male, age 80, left hemisphere 290.6
2620 Female, age 94, left hemisphere 202.4
Parahippocampal cortex
nTPM: 323.5
2018 Male, age 76, both hemispheres 513.4
2250 Female, age 67, right hemisphere 335.3
1933 Female, age 85, both hemispheres 332.8
1850 Male, age 80, both hemispheres 325.6
1990 Female, age 91, right hemisphere 320.8
2532 Female, age 72, left hemisphere 317.1
2692 Male, age 74, both hemispheres 301.2
2245 Female, age 91, both hemispheres 300.8
2622 Female, age 67, right hemisphere 261.4
2693 Female, age 94, both hemispheres 226.1
Perirhinal gyrus
nTPM: 342.8
1841 Female, age 85, right hemisphere 391.7
1847 Female, age 91, left hemisphere 362.4
1794 Male, age 80, right hemisphere 339.8
2848 Male, age 76, right hemisphere 317.6
2521 Female, age 94, right hemisphere 302.3
Subiculum
nTPM: 352.4
2042 Male, age 76, both hemispheres 429.5
1977 Female, age 85, both hemispheres 388.7
2729 Female, age 91, right hemisphere 342.2
2438 Female, age 94, left hemisphere 330.5
1901 Male, age 80, both hemispheres 315.3
2619 Male, age 74, both hemispheres 308.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 1261.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1261.9
Samples: 255

Max nTPM: 4464.3
Min nTPM: 447.5
Std nTPM: 477.5
Median nTPM: 1139.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 4464.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3243.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 2918.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2761.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2750.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2601.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2472.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 2467.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2392.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2374.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 2282.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 305.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 305.4
FF:10153-102I9 76 years, female 307.6
FF:10169-103B7 60 years, female 303.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 799.4
Pig sample Sample description nTPM
Subiculum
nTPM: 541.8
Samples: 4

Max nTPM: 818.2
Min nTPM: 411.3
Sample A Female 818.2
Sample B Female 488.7
Sample C Male 448.9
Sample D Male 411.3
Dorsal hippocampus
nTPM: 799.4
Samples: 4

Max nTPM: 1252.7
Min nTPM: 449.8
Sample A Female 1252.7
Sample B Female 587.6
Sample C Male 907.4
Sample D Male 449.8
Entorhinal cortex
nTPM: 470.3
Samples: 4

Max nTPM: 603.4
Min nTPM: 366.0
Sample A Female 453.1
Sample B Female 458.6
Sample C Male 603.4
Sample D Male 366.0
Ventral hippocampus
nTPM: 610.9
Samples: 4

Max nTPM: 754.5
Min nTPM: 455.8
Sample A Female 619.1
Sample B Female 455.8
Sample C Male 754.5
Sample D Male 614.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 29.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.2
Samples: 4

Max nTPM: 29.9
Min nTPM: 28.2
Sample A Male 28.2
Sample B Male 29.4
Sample C Female 29.1
Sample D Female 29.9
Hippocampal formation
nTPM: 28.8
Samples: 4

Max nTPM: 30.2
Min nTPM: 27.6
Sample A Male 30.2
Sample B Male 28.2
Sample C Female 27.6
Sample D Female 29.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
69873289 Antisense, RP_050510_04_H11, Mouse strain C57BL/6J (56 days, male) 6.6
70795718 Antisense, RP_050712_01_H01, Mouse strain C57BL/6J (56 days, male) 0.1

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