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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:95.7 nTPM
HPA Brain:184.0 nTPM
GTEx:95.7 nTPM
FANTOM5:341.6 Scaled Tags Per Million
Pig:135.7 nTPM
Mouse:89.6 nTPM
Allen mouse:15.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.0
Sample id Sample description nTPM
Amygdala
nTPM: 181.3
2695 Female, age 67, right hemisphere 210.3
2814 Male, age 76, right hemisphere 205.4
2514 Male, age 75, right hemisphere 189.4
1987 Female, age 91, left hemisphere 159.0
2517 Female, age 94, left hemisphere 142.4
Basal amygdala
nTPM: 142.0
2609 Male, age 75, right hemisphere 184.1
2827 Female, age 67, right hemisphere 147.7
2685 Female, age 94, left hemisphere 138.0
1955 Male, age 76, both hemispheres 136.0
2110 Male, age 80, left hemisphere 133.8
2243 Female, age 91, right hemisphere 112.6
Central amygdala
nTPM: 184.0
2826 Female, age 94, left hemisphere 275.5
2515 Male, age 75, right hemisphere 209.3
1905 Male, age 76, both hemispheres 173.1
2239 Male, age 80, left hemisphere 135.6
2701 Female, age 91, right hemisphere 126.5
Corticomedial amygdala
nTPM: 138.2
2428 Male, age 75, right hemisphere 188.3
2829 Male, age 80, left hemisphere 149.0
2240 Male, age 76, both hemispheres 144.0
2429 Female, age 94, left hemisphere 122.6
2242 Female, age 91, right hemisphere 118.9
2535 Female, age 67, right hemisphere 106.2
Lateral amygdala
nTPM: 168.9
2516 Male, age 75, right hemisphere 210.6
2830 Female, age 67, right hemisphere 193.9
2534 Female, age 94, left hemisphere 191.9
1883 Male, age 76, both hemispheres 186.5
2256 Male, age 80, left hemisphere 132.2
2255 Female, age 91, right hemisphere 98.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 95.7
Samples: 181

Max nTPM: 198.9
Min nTPM: 18.9
Std nTPM: 26.2
Median nTPM: 93.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 198.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 182.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 166.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 153.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 152.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 149.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 146.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 143.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 143.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 143.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 133.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 133.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 133.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 133.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 132.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 132.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 129.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 127.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 127.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 127.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 126.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 126.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 124.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 123.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 121.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 121.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 120.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 119.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 116.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 114.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 114.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 114.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 112.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 111.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 111.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 110.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 110.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 110.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 109.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 107.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 105.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 105.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 105.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 104.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 104.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 104.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 104.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 104.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 103.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 103.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 103.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 103.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 102.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 102.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 102.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 101.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 99.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 99.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 99.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 98.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 98.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 98.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 97.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 97.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 97.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 96.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 95.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 95.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 95.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 94.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 94.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 94.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 93.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 93.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 93.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 93.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 92.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 91.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 90.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 90.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 90.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 90.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 89.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 88.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 87.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 87.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 87.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 87.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 87.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 87.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 87.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 86.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 86.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 86.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 86.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 86.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 86.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 86.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 85.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 85.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 85.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 85.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 84.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 84.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 84.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 84.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 84.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 84.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 83.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 83.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 81.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 80.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 79.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 79.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 79.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 78.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 78.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 78.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 78.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 77.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 76.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 76.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 76.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 74.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 72.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 72.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 71.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 71.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 70.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 70.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 69.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 69.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 69.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 68.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 66.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 66.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 66.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 66.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 64.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 64.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 63.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 61.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 56.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 55.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 55.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 55.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 54.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 52.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 51.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 34.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 34.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 18.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

341.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 341.6
FF:10151-102I7 76 years, female 341.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.7
Pig sample Sample description nTPM
Amygdala
nTPM: 135.7
Samples: 4

Max nTPM: 156.1
Min nTPM: 113.5
Sample A Female 156.1
Sample B Female 154.3
Sample C Male 113.5
Sample D Male 119.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 89.6
Samples: 4

Max nTPM: 92.4
Min nTPM: 86.8
Sample A Male 92.4
Sample B Male 92.0
Sample C Female 87.2
Sample D Female 86.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
72182999 Antisense, RP_050927_03_B03, Mouse strain C57BL/6J (56 days, male) 15.6

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