We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
229.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 186.5
2019
Male, age 18, unknown
217.9
2586
Male, age 75, left hemisphere
202.1
2411
Female, age 72, unknown
195.7
2666
Male, age 74, left hemisphere
190.6
1870
Female, age 42, unknown
189.1
1827
Male, age 72, unknown
188.6
1833
Male, age 53, unknown
180.4
1830
Male, age 51, unknown
176.9
2828
Female, age 72, unknown
168.9
2219
Male, age 76, both hemispheres
155.1
Dorsal raphe nucleus nTPM: 192.0
2298
Female, age 72, unknown
206.9
1828
Male, age 53, unknown
190.3
2750
Male, age 76, both hemispheres
188.5
2016
Female, age 72, unknown
187.2
2047
Male, age 72, unknown
187.2
Inferior colliculus nTPM: 177.3
1890
Male, age 53, unknown
190.4
2097
Female, age 72, unknown
185.6
1848
Female, age 42, unknown
172.9
2849
Male, age 72, unknown
160.1
Median raphe nucleus nTPM: 182.3
2220
Male, age 76, midline
182.3
Periaquaductal grey, anterior nTPM: 196.4
2502
Female, age 75, unknown
231.0
1947
Male, age 18, unknown
190.9
1795
Male, age 51, unknown
167.4
Periaquaductal grey, dorsal nTPM: 170.7
1831
Male, age 72, unknown
180.7
1840
Male, age 53, unknown
175.2
2464
Female, age 72, unknown
170.0
2850
Male, age 76, both hemispheres
156.9
Periaquaductal grey, lateral nTPM: 164.4
2272
Male, age 74, both hemispheres
173.9
2053
Male, age 18, unknown
171.8
2140
Male, age 76, both hemispheres
147.4
Pretectal area nTPM: 187.5
1817
Female, age 42, unknown
220.6
1815
Male, age 53, unknown
214.2
2007
Male, age 72, unknown
213.9
1816
Male, age 51, unknown
212.7
1944
Female, age 72, unknown
206.4
2224
Female, age 72, unknown
184.9
2273
Male, age 74, both hemispheres
178.1
2407
Male, age 75, both hemispheres
170.6
2825
Male, age 18, unknown
160.6
2667
Female, age 75, unknown
160.4
2316
Male, age 76, right hemisphere
140.1
Red nucleus nTPM: 198.4
1821
Female, age 72, unknown
242.0
1865
Male, age 51, unknown
211.8
2503
Female, age 72, unknown
207.6
2725
Female, age 75, unknown
207.3
2785
Male, age 18, unknown
200.6
2584
Male, age 75, left hemisphere
198.4
1904
Male, age 53, unknown
194.0
1954
Female, age 42, unknown
193.4
2588
Male, age 74, left hemisphere
188.2
2769
Male, age 72, unknown
181.4
2823
Male, age 76, right hemisphere
178.4
2227
Male, age 72, unknown
178.0
Substantia nigra nTPM: 229.1
1916
Female, age 42, unknown
268.8
2409
Female, age 72, unknown
258.9
2241
Male, age 72, unknown
251.9
1851
Male, age 51, unknown
246.5
1941
Male, age 53, unknown
225.9
2699
Male, age 18, unknown
221.6
1889
Female, age 72, unknown
220.7
2590
Female, age 75, unknown
208.8
2665
Male, age 74, both hemispheres
208.1
2583
Male, age 75, right hemisphere
179.7
Superior colliculus nTPM: 183.1
2587
Male, age 74, left hemisphere
216.3
2668
Female, age 75, unknown
185.3
2087
Female, age 72, unknown
184.8
1995
Male, age 72, unknown
182.5
2664
Male, age 75, both hemispheres
182.0
1913
Female, age 42, unknown
179.2
2261
Male, age 18, unknown
177.2
1839
Male, age 51, unknown
176.8
1895
Male, age 76, right hemisphere
174.5
1796
Male, age 53, unknown
172.4
Ventral tegmental area nTPM: 197.0
2410
Female, age 72, unknown
223.0
1915
Female, age 42, unknown
212.3
2218
Male, age 76, both hemispheres
197.9
2223
Female, age 72, unknown
188.5
1942
Male, age 51, unknown
186.4
2021
Male, age 53, unknown
173.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 125.6
Samples: 183
Max nTPM: 245.4
Min nTPM: 29.6
Std nTPM: 35.6
Median nTPM: 122.4
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
245.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
238.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
230.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
208.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
205.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
199.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
199.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
198.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
194.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
193.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
193.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
185.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
181.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
178.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
177.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
174.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
172.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
171.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
169.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
167.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
166.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
166.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
166.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
165.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
164.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
163.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
161.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
159.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
159.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
158.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
158.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
157.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
156.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
156.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
155.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
153.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
153.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
152.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
152.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
152.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
150.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
150.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
150.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
149.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
149.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
148.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
148.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
148.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
145.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
144.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
143.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
142.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
142.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
142.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
141.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
141.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
139.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
139.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
138.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
138.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
137.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
135.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
135.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
135.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
133.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
133.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
133.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
132.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
131.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
131.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
130.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
128.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
128.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
127.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
127.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
127.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
127.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
127.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
126.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
126.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
126.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
125.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
125.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
124.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
123.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
123.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
123.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
123.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
123.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
122.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
122.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
122.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
121.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
121.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
121.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
120.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
120.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
119.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
119.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
119.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
119.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
118.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
117.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
117.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
117.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
117.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
115.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
115.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
115.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
114.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
114.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
114.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
112.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
111.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
111.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
110.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
110.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
109.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
109.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
108.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
108.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
108.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
108.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
107.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
107.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
106.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
106.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
105.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
105.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
104.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
104.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
104.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
104.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
103.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
103.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
103.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
102.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
101.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
101.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
101.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
100.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
99.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
99.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
99.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
98.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
98.5
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
98.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
97.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
97.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
96.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
94.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
93.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
93.5
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
93.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
91.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
91.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
91.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
90.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
87.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
86.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
85.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
85.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
84.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
84.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
83.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
80.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
79.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
78.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
78.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
78.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
77.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
76.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
75.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
74.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
73.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
72.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
71.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
71.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
64.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
61.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
60.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
54.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
29.6
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
232.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 210.1
Samples: 4
Max nTPM: 252.3
Min nTPM: 178.2
Sample A
Female
252.3
Sample B
Female
212.2
Sample C
Male
197.6
Sample D
Male
178.2
Midbrain nTPM: 230.0
Samples: 4
Max nTPM: 278.0
Min nTPM: 194.9
Sample A
Female
278.0
Sample B
Female
226.1
Sample C
Male
220.8
Sample D
Male
194.9
Periaqueductal gray nTPM: 180.1
Samples: 3
Max nTPM: 187.9
Min nTPM: 168.3
Sample B
Female
187.9
Sample C
Male
184.1
Sample D
Male
168.3
Superior colliculi nTPM: 232.6
Samples: 4
Max nTPM: 252.0
Min nTPM: 213.0
Sample A
Female
247.4
Sample B
Female
217.8
Sample C
Male
252.0
Sample D
Male
213.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 125.7
Samples: 4
Max nTPM: 134.0
Min nTPM: 121.1
Sample A
Male
121.1
Sample B
Male
123.5
Sample C
Female
134.0
Sample D
Female
124.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.