A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
301.8
nTPM
Monaco:
530.8
nTPM
Schmiedel:
133.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
301.8
HPA sample
nTPM
Memory B-cell nTPM: 301.8
Samples: 6
Max nTPM: 657.3
Min nTPM: 147.1
P10809_1017
147.1
P10809_1025
296.6
P10809_1044
657.3
P10809_1063
217.0
P10809_1092
260.7
P10809_1105
232.3
Naive B-cell nTPM: 289.4
Samples: 6
Max nTPM: 636.6
Min nTPM: 141.9
P10809_1011
141.9
P10809_1029
248.5
P10809_1048
636.6
P10809_1067
218.2
P10809_1091
260.8
P10809_1104
230.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
530.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 349.8
Samples: 4
Max nTPM: 408.8
Min nTPM: 271.6
RHH5310_R3677
408.8
RHH5218_R3590
326.9
RHH5247_R3619
391.8
RHH5276_R3648
271.6
Naive B-cell nTPM: 351.3
Samples: 4
Max nTPM: 390.2
Min nTPM: 292.2
RHH5308_R3675
347.1
RHH5216_R3588
390.2
RHH5245_R3617
292.2
RHH5274_R3646
375.8
Non-switched memory B-cell nTPM: 407.5
Samples: 4
Max nTPM: 493.3
Min nTPM: 342.5
RHH5309_R3676
391.4
RHH5217_R3589
402.9
RHH5246_R3618
493.3
RHH5275_R3647
342.5
Plasmablast nTPM: 530.7
Samples: 4
Max nTPM: 614.7
Min nTPM: 399.9
RHH5312_R3679
600.1
RHH5220_R3592
614.7
RHH5249_R3621
508.2
RHH5278_R3650
399.9
Switched memory B-cell nTPM: 371.4
Samples: 4
Max nTPM: 437.2
Min nTPM: 323.8
RHH5311_R3678
437.2
RHH5219_R3591
323.8
RHH5248_R3620
390.5
RHH5277_R3649
333.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.7
Schmiedel sample id
TPM
Naive B-cell TPM: 133.7
Samples: 91
Max TPM: 175.1
Min TPM: 75.1
B_CELL_NAIVE_1
175.1
B_CELL_NAIVE_2
172.8
B_CELL_NAIVE_3
172.2
B_CELL_NAIVE_4
168.6
B_CELL_NAIVE_5
167.8
B_CELL_NAIVE_6
167.0
B_CELL_NAIVE_7
165.6
B_CELL_NAIVE_8
165.4
B_CELL_NAIVE_9
164.6
B_CELL_NAIVE_10
164.3
B_CELL_NAIVE_11
164.1
B_CELL_NAIVE_12
162.1
B_CELL_NAIVE_13
160.9
B_CELL_NAIVE_14
160.0
B_CELL_NAIVE_15
159.6
B_CELL_NAIVE_16
158.5
B_CELL_NAIVE_17
156.9
B_CELL_NAIVE_18
156.8
B_CELL_NAIVE_19
156.1
B_CELL_NAIVE_20
154.8
B_CELL_NAIVE_21
154.4
B_CELL_NAIVE_22
153.2
B_CELL_NAIVE_23
151.2
B_CELL_NAIVE_24
148.4
B_CELL_NAIVE_25
148.2
B_CELL_NAIVE_26
146.9
B_CELL_NAIVE_27
146.6
B_CELL_NAIVE_28
145.4
B_CELL_NAIVE_29
144.5
B_CELL_NAIVE_30
144.4
B_CELL_NAIVE_31
143.3
B_CELL_NAIVE_32
141.7
B_CELL_NAIVE_33
141.4
B_CELL_NAIVE_34
141.4
B_CELL_NAIVE_35
141.3
B_CELL_NAIVE_36
141.2
B_CELL_NAIVE_37
141.0
B_CELL_NAIVE_38
140.6
B_CELL_NAIVE_39
140.0
B_CELL_NAIVE_40
139.6
B_CELL_NAIVE_41
139.6
B_CELL_NAIVE_42
139.4
B_CELL_NAIVE_43
138.0
B_CELL_NAIVE_44
135.8
B_CELL_NAIVE_45
135.5
B_CELL_NAIVE_46
135.1
B_CELL_NAIVE_47
134.9
B_CELL_NAIVE_48
134.6
B_CELL_NAIVE_49
133.7
B_CELL_NAIVE_50
132.6
B_CELL_NAIVE_51
132.4
B_CELL_NAIVE_52
131.6
B_CELL_NAIVE_53
131.3
B_CELL_NAIVE_54
130.1
B_CELL_NAIVE_55
129.9
B_CELL_NAIVE_56
129.5
B_CELL_NAIVE_57
129.4
B_CELL_NAIVE_58
129.2
B_CELL_NAIVE_59
127.5
B_CELL_NAIVE_60
124.2
B_CELL_NAIVE_61
124.0
B_CELL_NAIVE_62
124.0
B_CELL_NAIVE_63
123.5
B_CELL_NAIVE_64
123.5
B_CELL_NAIVE_65
119.7
B_CELL_NAIVE_66
118.6
B_CELL_NAIVE_67
118.4
B_CELL_NAIVE_68
117.8
B_CELL_NAIVE_69
116.6
B_CELL_NAIVE_70
114.2
B_CELL_NAIVE_71
114.0
B_CELL_NAIVE_72
113.2
B_CELL_NAIVE_73
113.0
B_CELL_NAIVE_74
112.2
B_CELL_NAIVE_75
111.8
B_CELL_NAIVE_76
111.2
B_CELL_NAIVE_77
109.4
B_CELL_NAIVE_78
107.9
B_CELL_NAIVE_79
107.0
B_CELL_NAIVE_80
106.1
B_CELL_NAIVE_81
106.0
B_CELL_NAIVE_82
105.1
B_CELL_NAIVE_83
102.4
B_CELL_NAIVE_84
101.1
B_CELL_NAIVE_85
99.9
B_CELL_NAIVE_86
98.8
B_CELL_NAIVE_87
96.8
B_CELL_NAIVE_88
96.7
B_CELL_NAIVE_89
79.9
B_CELL_NAIVE_90
77.0
B_CELL_NAIVE_91
75.1
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