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BETA
  • SUMMARY

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  • BRAIN

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  • TRAF3IP3
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:301.8 nTPM
Monaco:530.8 nTPM
Schmiedel:133.7 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

301.8
HPA sample nTPM
Memory B-cell
nTPM: 301.8
Samples: 6

Max nTPM: 657.3
Min nTPM: 147.1
P10809_1017 147.1
P10809_1025 296.6
P10809_1044 657.3
P10809_1063 217.0
P10809_1092 260.7
P10809_1105 232.3
Naive B-cell
nTPM: 289.4
Samples: 6

Max nTPM: 636.6
Min nTPM: 141.9
P10809_1011 141.9
P10809_1029 248.5
P10809_1048 636.6
P10809_1067 218.2
P10809_1091 260.8
P10809_1104 230.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

530.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 349.8
Samples: 4

Max nTPM: 408.8
Min nTPM: 271.6
RHH5310_R3677 408.8
RHH5218_R3590 326.9
RHH5247_R3619 391.8
RHH5276_R3648 271.6
Naive B-cell
nTPM: 351.3
Samples: 4

Max nTPM: 390.2
Min nTPM: 292.2
RHH5308_R3675 347.1
RHH5216_R3588 390.2
RHH5245_R3617 292.2
RHH5274_R3646 375.8
Non-switched memory B-cell
nTPM: 407.5
Samples: 4

Max nTPM: 493.3
Min nTPM: 342.5
RHH5309_R3676 391.4
RHH5217_R3589 402.9
RHH5246_R3618 493.3
RHH5275_R3647 342.5
Plasmablast
nTPM: 530.7
Samples: 4

Max nTPM: 614.7
Min nTPM: 399.9
RHH5312_R3679 600.1
RHH5220_R3592 614.7
RHH5249_R3621 508.2
RHH5278_R3650 399.9
Switched memory B-cell
nTPM: 371.4
Samples: 4

Max nTPM: 437.2
Min nTPM: 323.8
RHH5311_R3678 437.2
RHH5219_R3591 323.8
RHH5248_R3620 390.5
RHH5277_R3649 333.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

133.7
Schmiedel sample id TPM
Naive B-cell
TPM: 133.7
Samples: 91

Max TPM: 175.1
Min TPM: 75.1
B_CELL_NAIVE_1 175.1
B_CELL_NAIVE_2 172.8
B_CELL_NAIVE_3 172.2
B_CELL_NAIVE_4 168.6
B_CELL_NAIVE_5 167.8
B_CELL_NAIVE_6 167.0
B_CELL_NAIVE_7 165.6
B_CELL_NAIVE_8 165.4
B_CELL_NAIVE_9 164.6
B_CELL_NAIVE_10 164.3
B_CELL_NAIVE_11 164.1
B_CELL_NAIVE_12 162.1
B_CELL_NAIVE_13 160.9
B_CELL_NAIVE_14 160.0
B_CELL_NAIVE_15 159.6
B_CELL_NAIVE_16 158.5
B_CELL_NAIVE_17 156.9
B_CELL_NAIVE_18 156.8
B_CELL_NAIVE_19 156.1
B_CELL_NAIVE_20 154.8
B_CELL_NAIVE_21 154.4
B_CELL_NAIVE_22 153.2
B_CELL_NAIVE_23 151.2
B_CELL_NAIVE_24 148.4
B_CELL_NAIVE_25 148.2
B_CELL_NAIVE_26 146.9
B_CELL_NAIVE_27 146.6
B_CELL_NAIVE_28 145.4
B_CELL_NAIVE_29 144.5
B_CELL_NAIVE_30 144.4
B_CELL_NAIVE_31 143.3
B_CELL_NAIVE_32 141.7
B_CELL_NAIVE_33 141.4
B_CELL_NAIVE_34 141.4
B_CELL_NAIVE_35 141.3
B_CELL_NAIVE_36 141.2
B_CELL_NAIVE_37 141.0
B_CELL_NAIVE_38 140.6
B_CELL_NAIVE_39 140.0
B_CELL_NAIVE_40 139.6
B_CELL_NAIVE_41 139.6
B_CELL_NAIVE_42 139.4
B_CELL_NAIVE_43 138.0
B_CELL_NAIVE_44 135.8
B_CELL_NAIVE_45 135.5
B_CELL_NAIVE_46 135.1
B_CELL_NAIVE_47 134.9
B_CELL_NAIVE_48 134.6
B_CELL_NAIVE_49 133.7
B_CELL_NAIVE_50 132.6
B_CELL_NAIVE_51 132.4
B_CELL_NAIVE_52 131.6
B_CELL_NAIVE_53 131.3
B_CELL_NAIVE_54 130.1
B_CELL_NAIVE_55 129.9
B_CELL_NAIVE_56 129.5
B_CELL_NAIVE_57 129.4
B_CELL_NAIVE_58 129.2
B_CELL_NAIVE_59 127.5
B_CELL_NAIVE_60 124.2
B_CELL_NAIVE_61 124.0
B_CELL_NAIVE_62 124.0
B_CELL_NAIVE_63 123.5
B_CELL_NAIVE_64 123.5
B_CELL_NAIVE_65 119.7
B_CELL_NAIVE_66 118.6
B_CELL_NAIVE_67 118.4
B_CELL_NAIVE_68 117.8
B_CELL_NAIVE_69 116.6
B_CELL_NAIVE_70 114.2
B_CELL_NAIVE_71 114.0
B_CELL_NAIVE_72 113.2
B_CELL_NAIVE_73 113.0
B_CELL_NAIVE_74 112.2
B_CELL_NAIVE_75 111.8
B_CELL_NAIVE_76 111.2
B_CELL_NAIVE_77 109.4
B_CELL_NAIVE_78 107.9
B_CELL_NAIVE_79 107.0
B_CELL_NAIVE_80 106.1
B_CELL_NAIVE_81 106.0
B_CELL_NAIVE_82 105.1
B_CELL_NAIVE_83 102.4
B_CELL_NAIVE_84 101.1
B_CELL_NAIVE_85 99.9
B_CELL_NAIVE_86 98.8
B_CELL_NAIVE_87 96.8
B_CELL_NAIVE_88 96.7
B_CELL_NAIVE_89 79.9
B_CELL_NAIVE_90 77.0
B_CELL_NAIVE_91 75.1
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