A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
210.8
nTPM
Monaco:
387.7
nTPM
Schmiedel:
118.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.8
HPA sample
nTPM
Classical monocyte nTPM: 155.6
Samples: 6
Max nTPM: 229.3
Min nTPM: 116.2
P10809_1003
121.8
P10809_1020
178.7
P10809_1039
229.3
P10809_1058
116.2
P10809_1080
139.4
P10809_1107
148.4
Intermediate monocyte nTPM: 171.3
Samples: 6
Max nTPM: 221.1
Min nTPM: 115.7
P10809_1004
153.8
P10809_1023
210.4
P10809_1042
221.1
P10809_1061
173.1
P10809_1081
115.7
P10809_1108
153.4
Non-classical monocyte nTPM: 210.8
Samples: 5
Max nTPM: 289.6
Min nTPM: 145.5
P10809_1005
151.9
P10809_1053
248.3
P10809_1072
289.6
P10809_1082
145.5
P10809_1109
218.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
387.7
Monaco sample
nTPM
Classical monocyte nTPM: 303.3
Samples: 4
Max nTPM: 338.9
Min nTPM: 270.1
RHH5313_R3680
338.9
RHH5221_R3593
293.5
RHH5250_R3622
270.1
RHH5279_R3651
310.7
Intermediate monocyte nTPM: 297.1
Samples: 4
Max nTPM: 335.5
Min nTPM: 273.7
RHH5314_R3681
335.5
RHH5222_R3594
283.0
RHH5251_R3623
273.7
RHH5280_R3652
296.0
Non-classical monocyte nTPM: 387.7
Samples: 4
Max nTPM: 431.9
Min nTPM: 350.7
RHH5315_R3682
431.9
RHH5223_R3595
350.7
RHH5252_R3624
388.9
RHH5281_R3653
379.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.7
Schmiedel sample id
TPM
Classical monocyte TPM: 65.0
Samples: 91
Max TPM: 88.8
Min TPM: 46.6
MONOCYTES_1
88.8
MONOCYTES_2
88.3
MONOCYTES_3
84.8
MONOCYTES_4
82.9
MONOCYTES_5
81.9
MONOCYTES_6
79.6
MONOCYTES_7
79.1
MONOCYTES_8
78.0
MONOCYTES_9
77.5
MONOCYTES_10
77.5
MONOCYTES_11
76.7
MONOCYTES_12
76.1
MONOCYTES_13
76.0
MONOCYTES_14
75.0
MONOCYTES_15
74.8
MONOCYTES_16
74.3
MONOCYTES_17
73.3
MONOCYTES_18
72.6
MONOCYTES_19
72.4
MONOCYTES_20
72.3
MONOCYTES_21
72.2
MONOCYTES_22
71.8
MONOCYTES_23
71.6
MONOCYTES_24
71.3
MONOCYTES_25
71.2
MONOCYTES_26
71.1
MONOCYTES_27
70.9
MONOCYTES_28
68.9
MONOCYTES_29
68.6
MONOCYTES_30
68.2
MONOCYTES_31
68.2
MONOCYTES_32
68.1
MONOCYTES_33
67.5
MONOCYTES_34
67.4
MONOCYTES_35
67.2
MONOCYTES_36
66.3
MONOCYTES_37
65.7
MONOCYTES_38
65.6
MONOCYTES_39
65.1
MONOCYTES_40
64.9
MONOCYTES_41
64.7
MONOCYTES_42
64.6
MONOCYTES_43
64.6
MONOCYTES_44
64.1
MONOCYTES_45
64.0
MONOCYTES_46
63.7
MONOCYTES_47
63.6
MONOCYTES_48
63.6
MONOCYTES_49
63.2
MONOCYTES_50
63.2
MONOCYTES_51
62.7
MONOCYTES_52
62.5
MONOCYTES_53
62.3
MONOCYTES_54
62.1
MONOCYTES_55
62.1
MONOCYTES_56
62.1
MONOCYTES_57
61.9
MONOCYTES_58
61.6
MONOCYTES_59
60.8
MONOCYTES_60
60.8
MONOCYTES_61
60.6
MONOCYTES_62
60.4
MONOCYTES_63
60.0
MONOCYTES_64
60.0
MONOCYTES_65
59.9
MONOCYTES_66
59.8
MONOCYTES_67
59.1
MONOCYTES_68
58.8
MONOCYTES_69
58.6
MONOCYTES_70
58.0
MONOCYTES_71
57.9
MONOCYTES_72
57.8
MONOCYTES_73
57.8
MONOCYTES_74
57.4
MONOCYTES_75
57.2
MONOCYTES_76
56.8
MONOCYTES_77
56.7
MONOCYTES_78
55.9
MONOCYTES_79
55.2
MONOCYTES_80
55.0
MONOCYTES_81
54.8
MONOCYTES_82
54.2
MONOCYTES_83
53.4
MONOCYTES_84
53.2
MONOCYTES_85
52.6
MONOCYTES_86
52.2
MONOCYTES_87
52.0
MONOCYTES_88
51.7
MONOCYTES_89
47.0
MONOCYTES_90
46.9
MONOCYTES_91
46.6
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Non-classical monocyte TPM: 118.7
Samples: 90
Max TPM: 168.6
Min TPM: 78.8
M2_1
168.6
M2_2
154.0
M2_3
154.0
M2_4
152.1
M2_5
146.7
M2_6
141.8
M2_7
141.0
M2_8
140.2
M2_9
139.0
M2_10
138.8
M2_11
135.2
M2_12
134.4
M2_13
134.1
M2_14
133.9
M2_15
133.8
M2_16
133.3
M2_17
132.1
M2_18
131.7
M2_19
131.1
M2_20
130.9
M2_21
130.2
M2_22
129.7
M2_23
129.6
M2_24
129.6
M2_25
129.2
M2_26
129.1
M2_27
128.3
M2_28
128.0
M2_29
127.6
M2_30
126.9
M2_31
126.8
M2_32
126.7
M2_33
125.2
M2_34
125.0
M2_35
124.7
M2_36
123.2
M2_37
122.9
M2_38
122.5
M2_39
122.5
M2_40
122.2
M2_41
122.1
M2_42
121.8
M2_43
121.7
M2_44
120.1
M2_45
119.8
M2_46
119.5
M2_47
118.3
M2_48
117.5
M2_49
117.2
M2_50
116.8
M2_51
116.2
M2_52
115.4
M2_53
114.6
M2_54
114.1
M2_55
113.8
M2_56
113.4
M2_57
113.0
M2_58
112.9
M2_59
112.7
M2_60
111.5
M2_61
110.9
M2_62
110.7
M2_63
110.4
M2_64
108.3
M2_65
108.2
M2_66
108.0
M2_67
107.2
M2_68
105.9
M2_69
104.7
M2_70
104.0
M2_71
103.0
M2_72
102.4
M2_73
100.9
M2_74
100.3
M2_75
99.9
M2_76
99.4
M2_77
99.3
M2_78
99.2
M2_79
98.3
M2_80
98.2
M2_81
97.5
M2_82
97.3
M2_83
96.9
M2_84
96.4
M2_85
95.9
M2_86
93.5
M2_87
92.7
M2_88
92.5
M2_89
89.2
M2_90
78.8
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