A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.5
nTPM
Monaco:
22.7
nTPM
Schmiedel:
73.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.5
HPA sample
nTPM
Memory B-cell nTPM: 1.2
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.4
P10809_1017
1.2
P10809_1025
1.2
P10809_1044
1.0
P10809_1063
1.1
P10809_1092
2.4
P10809_1105
0.4
Naive B-cell nTPM: 2.5
Samples: 6
Max nTPM: 3.4
Min nTPM: 1.7
P10809_1011
3.4
P10809_1029
2.1
P10809_1048
2.7
P10809_1067
3.1
P10809_1091
2.1
P10809_1104
1.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 17.1
Samples: 4
Max nTPM: 28.2
Min nTPM: 11.9
RHH5310_R3677
11.9
RHH5218_R3590
15.7
RHH5247_R3619
12.6
RHH5276_R3648
28.2
Naive B-cell nTPM: 13.7
Samples: 4
Max nTPM: 14.8
Min nTPM: 13.2
RHH5308_R3675
13.5
RHH5216_R3588
13.2
RHH5245_R3617
13.3
RHH5274_R3646
14.8
Non-switched memory B-cell nTPM: 13.4
Samples: 4
Max nTPM: 21.3
Min nTPM: 6.4
RHH5309_R3676
11.7
RHH5217_R3589
6.4
RHH5246_R3618
14.0
RHH5275_R3647
21.3
Plasmablast nTPM: 22.7
Samples: 4
Max nTPM: 29.1
Min nTPM: 17.4
RHH5312_R3679
17.4
RHH5220_R3592
29.1
RHH5249_R3621
22.8
RHH5278_R3650
21.6
Switched memory B-cell nTPM: 19.4
Samples: 4
Max nTPM: 33.9
Min nTPM: 7.3
RHH5311_R3678
7.3
RHH5219_R3591
25.3
RHH5248_R3620
11.2
RHH5277_R3649
33.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.1
Schmiedel sample id
TPM
Naive B-cell TPM: 73.1
Samples: 91
Max TPM: 89.8
Min TPM: 55.4
B_CELL_NAIVE_1
89.8
B_CELL_NAIVE_2
88.5
B_CELL_NAIVE_3
86.9
B_CELL_NAIVE_4
85.8
B_CELL_NAIVE_5
85.4
B_CELL_NAIVE_6
84.8
B_CELL_NAIVE_7
82.3
B_CELL_NAIVE_8
82.0
B_CELL_NAIVE_9
81.7
B_CELL_NAIVE_10
81.4
B_CELL_NAIVE_11
81.2
B_CELL_NAIVE_12
81.1
B_CELL_NAIVE_13
80.9
B_CELL_NAIVE_14
80.1
B_CELL_NAIVE_15
79.7
B_CELL_NAIVE_16
79.7
B_CELL_NAIVE_17
79.6
B_CELL_NAIVE_18
79.5
B_CELL_NAIVE_19
79.5
B_CELL_NAIVE_20
79.2
B_CELL_NAIVE_21
79.1
B_CELL_NAIVE_22
78.9
B_CELL_NAIVE_23
78.4
B_CELL_NAIVE_24
77.7
B_CELL_NAIVE_25
77.5
B_CELL_NAIVE_26
77.4
B_CELL_NAIVE_27
77.1
B_CELL_NAIVE_28
76.7
B_CELL_NAIVE_29
76.7
B_CELL_NAIVE_30
76.7
B_CELL_NAIVE_31
76.4
B_CELL_NAIVE_32
76.3
B_CELL_NAIVE_33
76.1
B_CELL_NAIVE_34
75.7
B_CELL_NAIVE_35
75.5
B_CELL_NAIVE_36
75.4
B_CELL_NAIVE_37
75.1
B_CELL_NAIVE_38
75.1
B_CELL_NAIVE_39
74.9
B_CELL_NAIVE_40
74.7
B_CELL_NAIVE_41
74.5
B_CELL_NAIVE_42
74.3
B_CELL_NAIVE_43
73.8
B_CELL_NAIVE_44
73.4
B_CELL_NAIVE_45
73.2
B_CELL_NAIVE_46
72.9
B_CELL_NAIVE_47
72.7
B_CELL_NAIVE_48
72.7
B_CELL_NAIVE_49
72.3
B_CELL_NAIVE_50
72.0
B_CELL_NAIVE_51
71.9
B_CELL_NAIVE_52
71.8
B_CELL_NAIVE_53
71.7
B_CELL_NAIVE_54
71.3
B_CELL_NAIVE_55
70.9
B_CELL_NAIVE_56
70.5
B_CELL_NAIVE_57
70.4
B_CELL_NAIVE_58
70.0
B_CELL_NAIVE_59
69.8
B_CELL_NAIVE_60
69.8
B_CELL_NAIVE_61
69.6
B_CELL_NAIVE_62
69.6
B_CELL_NAIVE_63
69.6
B_CELL_NAIVE_64
69.4
B_CELL_NAIVE_65
69.3
B_CELL_NAIVE_66
69.1
B_CELL_NAIVE_67
68.8
B_CELL_NAIVE_68
68.8
B_CELL_NAIVE_69
68.8
B_CELL_NAIVE_70
68.7
B_CELL_NAIVE_71
68.0
B_CELL_NAIVE_72
68.0
B_CELL_NAIVE_73
67.5
B_CELL_NAIVE_74
67.3
B_CELL_NAIVE_75
67.1
B_CELL_NAIVE_76
67.0
B_CELL_NAIVE_77
66.1
B_CELL_NAIVE_78
65.6
B_CELL_NAIVE_79
65.0
B_CELL_NAIVE_80
64.2
B_CELL_NAIVE_81
64.2
B_CELL_NAIVE_82
64.1
B_CELL_NAIVE_83
63.7
B_CELL_NAIVE_84
63.5
B_CELL_NAIVE_85
63.0
B_CELL_NAIVE_86
62.7
B_CELL_NAIVE_87
62.3
B_CELL_NAIVE_88
60.7
B_CELL_NAIVE_89
58.9
B_CELL_NAIVE_90
57.8
B_CELL_NAIVE_91
55.4
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