A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
13.5
nTPM
Schmiedel:
51.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.2
Min nTPM: 1.2
P10809_1003
1.7
P10809_1020
1.2
P10809_1039
1.4
P10809_1058
2.2
P10809_1080
1.4
P10809_1107
1.3
Intermediate monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.7
P10809_1004
0.7
P10809_1023
0.8
P10809_1042
0.8
P10809_1061
1.2
P10809_1081
1.9
P10809_1108
1.2
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.7
Min nTPM: 0.0
P10809_1005
1.2
P10809_1053
0.7
P10809_1072
0.0
P10809_1082
1.7
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
Monaco sample
nTPM
Classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 15.7
Min nTPM: 9.6
RHH5313_R3680
14.5
RHH5221_R3593
9.6
RHH5250_R3622
14.5
RHH5279_R3651
15.7
Intermediate monocyte nTPM: 12.2
Samples: 4
Max nTPM: 17.2
Min nTPM: 8.8
RHH5314_R3681
10.8
RHH5222_R3594
8.8
RHH5251_R3623
17.2
RHH5280_R3652
11.9
Non-classical monocyte nTPM: 13.1
Samples: 4
Max nTPM: 17.3
Min nTPM: 8.0
RHH5315_R3682
13.5
RHH5223_R3595
8.0
RHH5252_R3624
17.3
RHH5281_R3653
13.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.7
Schmiedel sample id
TPM
Classical monocyte TPM: 31.7
Samples: 91
Max TPM: 43.1
Min TPM: 21.4
MONOCYTES_1
43.1
MONOCYTES_2
41.4
MONOCYTES_3
40.9
MONOCYTES_4
39.7
MONOCYTES_5
38.5
MONOCYTES_6
37.5
MONOCYTES_7
37.1
MONOCYTES_8
37.0
MONOCYTES_9
36.7
MONOCYTES_10
36.2
MONOCYTES_11
35.8
MONOCYTES_12
35.8
MONOCYTES_13
35.8
MONOCYTES_14
35.5
MONOCYTES_15
35.0
MONOCYTES_16
34.9
MONOCYTES_17
34.9
MONOCYTES_18
34.7
MONOCYTES_19
34.3
MONOCYTES_20
34.3
MONOCYTES_21
34.2
MONOCYTES_22
34.2
MONOCYTES_23
33.9
MONOCYTES_24
33.9
MONOCYTES_25
33.8
MONOCYTES_26
33.7
MONOCYTES_27
33.5
MONOCYTES_28
33.4
MONOCYTES_29
33.4
MONOCYTES_30
33.4
MONOCYTES_31
33.4
MONOCYTES_32
33.3
MONOCYTES_33
33.1
MONOCYTES_34
33.1
MONOCYTES_35
33.1
MONOCYTES_36
32.8
MONOCYTES_37
32.8
MONOCYTES_38
32.8
MONOCYTES_39
32.6
MONOCYTES_40
32.6
MONOCYTES_41
32.4
MONOCYTES_42
32.2
MONOCYTES_43
32.2
MONOCYTES_44
32.1
MONOCYTES_45
32.1
MONOCYTES_46
32.0
MONOCYTES_47
31.8
MONOCYTES_48
31.6
MONOCYTES_49
31.5
MONOCYTES_50
31.3
MONOCYTES_51
31.1
MONOCYTES_52
31.1
MONOCYTES_53
30.8
MONOCYTES_54
30.8
MONOCYTES_55
30.8
MONOCYTES_56
30.7
MONOCYTES_57
30.7
MONOCYTES_58
30.6
MONOCYTES_59
30.4
MONOCYTES_60
30.4
MONOCYTES_61
30.3
MONOCYTES_62
30.1
MONOCYTES_63
30.0
MONOCYTES_64
29.8
MONOCYTES_65
29.8
MONOCYTES_66
29.4
MONOCYTES_67
29.4
MONOCYTES_68
29.4
MONOCYTES_69
29.3
MONOCYTES_70
29.2
MONOCYTES_71
29.2
MONOCYTES_72
28.9
MONOCYTES_73
28.2
MONOCYTES_74
28.0
MONOCYTES_75
28.0
MONOCYTES_76
27.9
MONOCYTES_77
27.8
MONOCYTES_78
27.3
MONOCYTES_79
27.3
MONOCYTES_80
27.2
MONOCYTES_81
27.1
MONOCYTES_82
26.8
MONOCYTES_83
26.2
MONOCYTES_84
26.2
MONOCYTES_85
26.0
MONOCYTES_86
25.7
MONOCYTES_87
25.2
MONOCYTES_88
25.0
MONOCYTES_89
24.7
MONOCYTES_90
23.4
MONOCYTES_91
21.4
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Non-classical monocyte TPM: 51.7
Samples: 90
Max TPM: 70.8
Min TPM: 40.8
M2_1
70.8
M2_2
68.8
M2_3
68.1
M2_4
67.9
M2_5
65.8
M2_6
64.1
M2_7
63.9
M2_8
63.4
M2_9
60.8
M2_10
60.4
M2_11
60.4
M2_12
58.3
M2_13
58.0
M2_14
57.9
M2_15
57.7
M2_16
56.8
M2_17
56.7
M2_18
56.6
M2_19
56.5
M2_20
56.5
M2_21
56.4
M2_22
56.0
M2_23
55.7
M2_24
54.9
M2_25
54.2
M2_26
54.0
M2_27
53.7
M2_28
53.7
M2_29
53.6
M2_30
53.6
M2_31
53.5
M2_32
53.4
M2_33
53.3
M2_34
53.1
M2_35
52.6
M2_36
52.5
M2_37
52.3
M2_38
52.2
M2_39
52.2
M2_40
52.2
M2_41
52.1
M2_42
52.1
M2_43
52.0
M2_44
50.6
M2_45
50.5
M2_46
50.2
M2_47
50.0
M2_48
49.7
M2_49
49.5
M2_50
49.4
M2_51
49.4
M2_52
49.3
M2_53
49.3
M2_54
49.3
M2_55
48.8
M2_56
48.7
M2_57
48.6
M2_58
48.4
M2_59
48.4
M2_60
48.2
M2_61
48.1
M2_62
48.0
M2_63
47.9
M2_64
47.8
M2_65
47.7
M2_66
47.7
M2_67
47.3
M2_68
47.0
M2_69
46.8
M2_70
46.6
M2_71
46.5
M2_72
46.5
M2_73
46.1
M2_74
46.0
M2_75
45.9
M2_76
45.6
M2_77
45.6
M2_78
45.0
M2_79
45.0
M2_80
44.9
M2_81
44.4
M2_82
44.1
M2_83
43.9
M2_84
43.5
M2_85
43.2
M2_86
42.7
M2_87
42.5
M2_88
42.3
M2_89
40.8
M2_90
40.8
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