MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:43.2 nTPM
GTEx:22.6 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:73.2 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
2586 Male, age 75, left hemisphere 39.3
2019 Male, age 18, unknown 35.9
1827 Male, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 33.0
2666 Male, age 74, left hemisphere 32.2
1833 Male, age 53, unknown 31.1
1870 Female, age 42, unknown 30.7
2411 Female, age 72, unknown 30.6
2828 Female, age 72, unknown 30.4
1830 Male, age 51, unknown 28.1
Dorsal raphe nucleus
nTPM: 35.1
2047 Male, age 72, unknown 37.4
2750 Male, age 76, both hemispheres 36.2
2298 Female, age 72, unknown 36.1
1828 Male, age 53, unknown 34.6
2016 Female, age 72, unknown 31.4
Inferior colliculus
nTPM: 31.8
2097 Female, age 72, unknown 34.4
1890 Male, age 53, unknown 33.3
1848 Female, age 42, unknown 30.6
2849 Male, age 72, unknown 28.9
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Periaquaductal grey, anterior
nTPM: 35.1
2502 Female, age 75, unknown 37.1
1947 Male, age 18, unknown 36.2
1795 Male, age 51, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 31.1
2850 Male, age 76, both hemispheres 37.4
1840 Male, age 53, unknown 31.3
2464 Female, age 72, unknown 28.3
1831 Male, age 72, unknown 27.5
Periaquaductal grey, lateral
nTPM: 32.0
2140 Male, age 76, both hemispheres 36.3
2272 Male, age 74, both hemispheres 33.1
2053 Male, age 18, unknown 26.6
Pretectal area
nTPM: 36.8
1816 Male, age 51, unknown 45.3
2007 Male, age 72, unknown 45.1
1817 Female, age 42, unknown 42.4
1944 Female, age 72, unknown 41.9
1815 Male, age 53, unknown 39.1
2667 Female, age 75, unknown 35.2
2273 Male, age 74, both hemispheres 33.7
2224 Female, age 72, unknown 32.5
2316 Male, age 76, right hemisphere 32.5
2407 Male, age 75, both hemispheres 28.6
2825 Male, age 18, unknown 28.5
Red nucleus
nTPM: 32.5
1821 Female, age 72, unknown 37.7
2785 Male, age 18, unknown 37.4
2725 Female, age 75, unknown 33.3
2503 Female, age 72, unknown 32.3
2769 Male, age 72, unknown 32.2
1954 Female, age 42, unknown 32.1
2588 Male, age 74, left hemisphere 31.7
1865 Male, age 51, unknown 31.4
1904 Male, age 53, unknown 31.3
2227 Male, age 72, unknown 30.7
2584 Male, age 75, left hemisphere 30.3
2823 Male, age 76, right hemisphere 29.7
Substantia nigra
nTPM: 43.2
1916 Female, age 42, unknown 56.6
1851 Male, age 51, unknown 48.6
2241 Male, age 72, unknown 48.0
1941 Male, age 53, unknown 46.6
2699 Male, age 18, unknown 44.4
1889 Female, age 72, unknown 42.4
2409 Female, age 72, unknown 41.1
2665 Male, age 74, both hemispheres 36.3
2590 Female, age 75, unknown 35.3
2583 Male, age 75, right hemisphere 33.0
Superior colliculus
nTPM: 32.1
2668 Female, age 75, unknown 36.7
2087 Female, age 72, unknown 36.5
2261 Male, age 18, unknown 35.2
1796 Male, age 53, unknown 34.3
2587 Male, age 74, left hemisphere 34.1
1895 Male, age 76, right hemisphere 31.8
1839 Male, age 51, unknown 29.7
1913 Female, age 42, unknown 28.6
1995 Male, age 72, unknown 27.2
2664 Male, age 75, both hemispheres 26.7
Ventral tegmental area
nTPM: 37.0
1915 Female, age 42, unknown 42.4
2218 Male, age 76, both hemispheres 42.0
2410 Female, age 72, unknown 39.9
1942 Male, age 51, unknown 36.0
2223 Female, age 72, unknown 32.0
2021 Male, age 53, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 183

Max nTPM: 50.0
Min nTPM: 11.9
Std nTPM: 7.9
Median nTPM: 20.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 49.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 48.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 40.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 39.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 38.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.2
Samples: 4

Max nTPM: 54.8
Min nTPM: 40.6
Sample A Female 54.8
Sample B Female 40.6
Sample C Male 48.1
Sample D Male 53.3
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 63.0
Min nTPM: 52.1
Sample A Female 63.0
Sample B Female 53.4
Sample C Male 57.7
Sample D Male 52.1
Periaqueductal gray
nTPM: 43.3
Samples: 3

Max nTPM: 45.5
Min nTPM: 41.5
Sample B Female 45.5
Sample C Male 42.9
Sample D Male 41.5
Superior colliculi
nTPM: 53.0
Samples: 4

Max nTPM: 61.5
Min nTPM: 40.2
Sample A Female 54.3
Sample B Female 40.2
Sample C Male 61.5
Sample D Male 56.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 78.9
Min nTPM: 68.3
Sample A Male 68.3
Sample B Male 71.9
Sample C Female 78.9
Sample D Female 73.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69817940 Antisense, RP_050510_04_A11, Mouse strain C57BL/6J (56 days, male) 3.3

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