On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.4
nTPM
HPA Brain:
81.4
nTPM
GTEx:
46.4
nTPM
FANTOM5:
219.3
Scaled Tags Per Million
Macaque:
140.8
nTPM
Mouse:
39.0
nTPM
Pig:
163.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
5517
Sample
Intensity
Spinal cord_01
6546
Spinal cord_02
6707
Spinal cord_03
6013
Spinal cord_04
5021
Spinal cord_05
2753
Spinal cord_06
ND
Spinal cord_07
2583
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.4
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 72.5
2193
Male, age 75, both hemispheres
79.5
2818
Female, age 79, both hemispheres
72.4
2819
Male, age 47, both hemispheres
70.2
2734
Male, age 80, both hemispheres
67.9
Cervical spinal cord, central gray nTPM: 70.5
2816
Male, age 47, midline
77.6
2048
Male, age 55, midline
73.1
1981
Female, age 72, midline
70.9
2194
Female, age 79, both hemispheres
67.3
2565
Male, age 75, midline
63.7
Cervical spinal cord, dorsal horn nTPM: 77.5
2296
Male, age 66, both hemispheres
89.7
2173
Female, age 72, unknown
80.4
1877
Male, age 55, unknown
74.5
2297
Male, age 75, both hemispheres
74.5
2069
Male, age 47, both hemispheres
74.0
2721
Male, age 90, both hemispheres
71.8
Cervical spinal cord, ventral horn nTPM: 68.7
2098
Female, age 72, unknown
79.8
2068
Male, age 55, unknown
72.3
2295
Male, age 66, both hemispheres
66.3
2809
Male, age 90, both hemispheres
66.3
2820
Female, age 79, both hemispheres
66.3
2480
Male, age 75, both hemispheres
61.0
Dorsal funiculus (white matter) nTPM: 80.2
2810
Male, age 90, both hemispheres
82.1
2064
Female, age 79, both hemispheres
81.9
2128
Male, age 75, both hemispheres
80.1
2812
Male, age 66, both hemispheres
78.5
2817
Male, age 47, both hemispheres
78.2
Lateral funiculus (white matter) nTPM: 81.4
2099
Male, age 90, both hemispheres
88.1
2192
Male, age 75, both hemispheres
83.0
2094
Female, age 79, both hemispheres
80.9
2294
Male, age 66, both hemispheres
73.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.4
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 46.4
Samples: 204
Max nTPM: 77.5
Min nTPM: 29.3
Std nTPM: 7.5
Median nTPM: 46.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
77.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
68.8
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
66.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
62.6
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
62.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
61.8
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
61.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
59.1
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
58.9
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
58.9
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
58.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
58.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
57.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
56.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
56.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
56.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
56.6
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
56.3
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
56.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
56.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
56.1
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
55.8
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
55.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
54.9
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
54.3
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
54.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
54.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
53.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
53.9
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
53.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
53.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
53.3
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
53.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
53.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
53.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
53.2
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
53.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
52.9
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
52.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
52.7
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
52.7
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
52.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
52.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
52.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
52.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
52.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
51.9
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
51.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
51.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
51.4
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
50.9
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
50.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
50.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
50.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
50.6
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
50.5
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
50.4
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
50.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
50.3
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
50.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
50.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
50.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
50.1
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
50.1
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
50.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
49.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
49.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
49.6
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
49.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
49.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
49.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
49.5
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
49.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
49.5
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
49.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
49.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
49.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
49.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
48.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
48.7
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
48.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
48.6
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
48.5
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
48.4
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
48.1
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
48.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
48.1
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
47.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
47.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
47.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
47.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
47.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
47.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
47.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
46.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
46.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
46.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
46.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
46.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
46.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
46.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
46.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
46.5
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
46.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
46.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
46.0
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
46.0
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
45.7
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
45.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
45.5
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
45.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
45.4
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
45.3
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
45.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
45.2
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
45.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
45.0
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
44.7
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
44.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
44.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
44.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
43.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
43.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
43.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
43.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
43.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
43.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
43.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
43.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
43.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
42.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
42.8
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
42.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
42.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
42.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
42.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
42.4
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
42.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
42.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
42.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
41.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
41.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
41.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
41.7
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
41.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
41.7
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
41.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
41.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
41.2
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
41.2
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
40.8
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
40.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
40.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
40.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
40.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
40.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
40.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
40.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
40.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
40.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
39.9
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
39.7
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
39.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
39.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
39.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
39.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
39.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
38.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
38.8
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
38.8
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
38.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
38.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
38.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
38.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
38.4
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
38.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
38.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
38.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
38.2
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
38.1
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
38.1
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
38.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
37.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
37.5
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
37.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
37.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
37.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
36.9
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
36.8
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
36.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
35.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
34.5
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
34.5
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
34.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
34.3
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
34.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
34.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
33.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
33.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
33.4
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
32.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
32.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
29.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
29.3
Show allShow less
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
140.8
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 140.8
Samples: 2
Max nTPM: 147.0
Min nTPM: 134.6
Sample A
147.0
Sample B
134.6
Ventral spinal cord nTPM: 128.5
Samples: 1
Max nTPM: 128.5
Min nTPM: 128.5
Sample A
128.5
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
163.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 159.3
Samples: 4
Max nTPM: 170.6
Min nTPM: 148.5
Sample A
Female
148.5
Sample B
Female
170.6
Sample C
Male
154.6
Sample D
Male
163.4
Ventral spinal cord nTPM: 163.8
Samples: 4
Max nTPM: 174.6
Min nTPM: 151.7
Sample A
Female
160.3
Sample B
Female
168.5
Sample C
Male
151.7
Sample D
Male
174.6
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.0
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 39.0
Samples: 4
Max nTPM: 44.0
Min nTPM: 33.5
Sample A
44.0
Sample B
33.5
Sample C
39.5
Sample D
39.0
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
