A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.9
nTPM
Monaco:
439.7
nTPM
Schmiedel:
93.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.9
HPA sample
nTPM
Memory B-cell nTPM: 59.9
Samples: 6
Max nTPM: 67.2
Min nTPM: 48.9
P10809_1017
67.2
P10809_1025
62.8
P10809_1044
52.9
P10809_1063
63.3
P10809_1092
48.9
P10809_1105
64.4
Naive B-cell nTPM: 44.9
Samples: 6
Max nTPM: 54.9
Min nTPM: 33.2
P10809_1011
38.2
P10809_1029
49.2
P10809_1048
33.2
P10809_1067
54.9
P10809_1091
45.4
P10809_1104
48.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
439.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 243.8
Samples: 4
Max nTPM: 262.9
Min nTPM: 225.2
RHH5310_R3677
241.1
RHH5218_R3590
246.0
RHH5247_R3619
225.2
RHH5276_R3648
262.9
Naive B-cell nTPM: 194.4
Samples: 4
Max nTPM: 245.4
Min nTPM: 162.0
RHH5308_R3675
164.0
RHH5216_R3588
245.4
RHH5245_R3617
162.0
RHH5274_R3646
206.0
Non-switched memory B-cell nTPM: 252.2
Samples: 4
Max nTPM: 305.9
Min nTPM: 227.8
RHH5309_R3676
227.8
RHH5217_R3589
305.9
RHH5246_R3618
230.5
RHH5275_R3647
244.5
Plasmablast nTPM: 439.7
Samples: 4
Max nTPM: 490.7
Min nTPM: 411.8
RHH5312_R3679
441.1
RHH5220_R3592
490.7
RHH5249_R3621
411.8
RHH5278_R3650
415.3
Switched memory B-cell nTPM: 253.6
Samples: 4
Max nTPM: 294.1
Min nTPM: 205.1
RHH5311_R3678
235.2
RHH5219_R3591
280.1
RHH5248_R3620
294.1
RHH5277_R3649
205.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.7
Schmiedel sample id
TPM
Naive B-cell TPM: 93.7
Samples: 91
Max TPM: 141.3
Min TPM: 55.4
B_CELL_NAIVE_1
141.3
B_CELL_NAIVE_2
130.6
B_CELL_NAIVE_3
127.4
B_CELL_NAIVE_4
122.2
B_CELL_NAIVE_5
121.1
B_CELL_NAIVE_6
117.9
B_CELL_NAIVE_7
113.7
B_CELL_NAIVE_8
112.4
B_CELL_NAIVE_9
112.3
B_CELL_NAIVE_10
112.1
B_CELL_NAIVE_11
111.2
B_CELL_NAIVE_12
107.6
B_CELL_NAIVE_13
107.4
B_CELL_NAIVE_14
104.8
B_CELL_NAIVE_15
104.8
B_CELL_NAIVE_16
103.3
B_CELL_NAIVE_17
101.8
B_CELL_NAIVE_18
100.3
B_CELL_NAIVE_19
100.2
B_CELL_NAIVE_20
100.1
B_CELL_NAIVE_21
99.5
B_CELL_NAIVE_22
99.3
B_CELL_NAIVE_23
99.1
B_CELL_NAIVE_24
98.9
B_CELL_NAIVE_25
98.8
B_CELL_NAIVE_26
98.7
B_CELL_NAIVE_27
98.5
B_CELL_NAIVE_28
98.3
B_CELL_NAIVE_29
98.2
B_CELL_NAIVE_30
98.2
B_CELL_NAIVE_31
97.8
B_CELL_NAIVE_32
96.9
B_CELL_NAIVE_33
96.8
B_CELL_NAIVE_34
96.2
B_CELL_NAIVE_35
96.2
B_CELL_NAIVE_36
95.9
B_CELL_NAIVE_37
95.5
B_CELL_NAIVE_38
95.4
B_CELL_NAIVE_39
95.0
B_CELL_NAIVE_40
95.0
B_CELL_NAIVE_41
94.9
B_CELL_NAIVE_42
94.7
B_CELL_NAIVE_43
94.5
B_CELL_NAIVE_44
94.4
B_CELL_NAIVE_45
94.4
B_CELL_NAIVE_46
93.6
B_CELL_NAIVE_47
93.5
B_CELL_NAIVE_48
93.4
B_CELL_NAIVE_49
93.2
B_CELL_NAIVE_50
92.9
B_CELL_NAIVE_51
92.5
B_CELL_NAIVE_52
92.3
B_CELL_NAIVE_53
91.5
B_CELL_NAIVE_54
91.5
B_CELL_NAIVE_55
91.4
B_CELL_NAIVE_56
90.8
B_CELL_NAIVE_57
89.7
B_CELL_NAIVE_58
89.3
B_CELL_NAIVE_59
89.1
B_CELL_NAIVE_60
88.7
B_CELL_NAIVE_61
88.1
B_CELL_NAIVE_62
87.9
B_CELL_NAIVE_63
87.9
B_CELL_NAIVE_64
87.9
B_CELL_NAIVE_65
86.6
B_CELL_NAIVE_66
85.4
B_CELL_NAIVE_67
85.4
B_CELL_NAIVE_68
85.2
B_CELL_NAIVE_69
85.0
B_CELL_NAIVE_70
85.0
B_CELL_NAIVE_71
84.8
B_CELL_NAIVE_72
84.7
B_CELL_NAIVE_73
83.4
B_CELL_NAIVE_74
83.1
B_CELL_NAIVE_75
82.8
B_CELL_NAIVE_76
82.1
B_CELL_NAIVE_77
81.4
B_CELL_NAIVE_78
81.3
B_CELL_NAIVE_79
81.3
B_CELL_NAIVE_80
80.3
B_CELL_NAIVE_81
79.1
B_CELL_NAIVE_82
77.5
B_CELL_NAIVE_83
76.5
B_CELL_NAIVE_84
74.9
B_CELL_NAIVE_85
74.0
B_CELL_NAIVE_86
73.0
B_CELL_NAIVE_87
72.0
B_CELL_NAIVE_88
71.1
B_CELL_NAIVE_89
69.2
B_CELL_NAIVE_90
67.8
B_CELL_NAIVE_91
55.4
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