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HPA
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BETA
  • SUMMARY

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  • BRAIN

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  • ZNF207
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:59.9 nTPM
Monaco:439.7 nTPM
Schmiedel:93.7 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

59.9
HPA sample nTPM
Memory B-cell
nTPM: 59.9
Samples: 6

Max nTPM: 67.2
Min nTPM: 48.9
P10809_1017 67.2
P10809_1025 62.8
P10809_1044 52.9
P10809_1063 63.3
P10809_1092 48.9
P10809_1105 64.4
Naive B-cell
nTPM: 44.9
Samples: 6

Max nTPM: 54.9
Min nTPM: 33.2
P10809_1011 38.2
P10809_1029 49.2
P10809_1048 33.2
P10809_1067 54.9
P10809_1091 45.4
P10809_1104 48.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

439.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 243.8
Samples: 4

Max nTPM: 262.9
Min nTPM: 225.2
RHH5310_R3677 241.1
RHH5218_R3590 246.0
RHH5247_R3619 225.2
RHH5276_R3648 262.9
Naive B-cell
nTPM: 194.4
Samples: 4

Max nTPM: 245.4
Min nTPM: 162.0
RHH5308_R3675 164.0
RHH5216_R3588 245.4
RHH5245_R3617 162.0
RHH5274_R3646 206.0
Non-switched memory B-cell
nTPM: 252.2
Samples: 4

Max nTPM: 305.9
Min nTPM: 227.8
RHH5309_R3676 227.8
RHH5217_R3589 305.9
RHH5246_R3618 230.5
RHH5275_R3647 244.5
Plasmablast
nTPM: 439.7
Samples: 4

Max nTPM: 490.7
Min nTPM: 411.8
RHH5312_R3679 441.1
RHH5220_R3592 490.7
RHH5249_R3621 411.8
RHH5278_R3650 415.3
Switched memory B-cell
nTPM: 253.6
Samples: 4

Max nTPM: 294.1
Min nTPM: 205.1
RHH5311_R3678 235.2
RHH5219_R3591 280.1
RHH5248_R3620 294.1
RHH5277_R3649 205.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

93.7
Schmiedel sample id TPM
Naive B-cell
TPM: 93.7
Samples: 91

Max TPM: 141.3
Min TPM: 55.4
B_CELL_NAIVE_1 141.3
B_CELL_NAIVE_2 130.6
B_CELL_NAIVE_3 127.4
B_CELL_NAIVE_4 122.2
B_CELL_NAIVE_5 121.1
B_CELL_NAIVE_6 117.9
B_CELL_NAIVE_7 113.7
B_CELL_NAIVE_8 112.4
B_CELL_NAIVE_9 112.3
B_CELL_NAIVE_10 112.1
B_CELL_NAIVE_11 111.2
B_CELL_NAIVE_12 107.6
B_CELL_NAIVE_13 107.4
B_CELL_NAIVE_14 104.8
B_CELL_NAIVE_15 104.8
B_CELL_NAIVE_16 103.3
B_CELL_NAIVE_17 101.8
B_CELL_NAIVE_18 100.3
B_CELL_NAIVE_19 100.2
B_CELL_NAIVE_20 100.1
B_CELL_NAIVE_21 99.5
B_CELL_NAIVE_22 99.3
B_CELL_NAIVE_23 99.1
B_CELL_NAIVE_24 98.9
B_CELL_NAIVE_25 98.8
B_CELL_NAIVE_26 98.7
B_CELL_NAIVE_27 98.5
B_CELL_NAIVE_28 98.3
B_CELL_NAIVE_29 98.2
B_CELL_NAIVE_30 98.2
B_CELL_NAIVE_31 97.8
B_CELL_NAIVE_32 96.9
B_CELL_NAIVE_33 96.8
B_CELL_NAIVE_34 96.2
B_CELL_NAIVE_35 96.2
B_CELL_NAIVE_36 95.9
B_CELL_NAIVE_37 95.5
B_CELL_NAIVE_38 95.4
B_CELL_NAIVE_39 95.0
B_CELL_NAIVE_40 95.0
B_CELL_NAIVE_41 94.9
B_CELL_NAIVE_42 94.7
B_CELL_NAIVE_43 94.5
B_CELL_NAIVE_44 94.4
B_CELL_NAIVE_45 94.4
B_CELL_NAIVE_46 93.6
B_CELL_NAIVE_47 93.5
B_CELL_NAIVE_48 93.4
B_CELL_NAIVE_49 93.2
B_CELL_NAIVE_50 92.9
B_CELL_NAIVE_51 92.5
B_CELL_NAIVE_52 92.3
B_CELL_NAIVE_53 91.5
B_CELL_NAIVE_54 91.5
B_CELL_NAIVE_55 91.4
B_CELL_NAIVE_56 90.8
B_CELL_NAIVE_57 89.7
B_CELL_NAIVE_58 89.3
B_CELL_NAIVE_59 89.1
B_CELL_NAIVE_60 88.7
B_CELL_NAIVE_61 88.1
B_CELL_NAIVE_62 87.9
B_CELL_NAIVE_63 87.9
B_CELL_NAIVE_64 87.9
B_CELL_NAIVE_65 86.6
B_CELL_NAIVE_66 85.4
B_CELL_NAIVE_67 85.4
B_CELL_NAIVE_68 85.2
B_CELL_NAIVE_69 85.0
B_CELL_NAIVE_70 85.0
B_CELL_NAIVE_71 84.8
B_CELL_NAIVE_72 84.7
B_CELL_NAIVE_73 83.4
B_CELL_NAIVE_74 83.1
B_CELL_NAIVE_75 82.8
B_CELL_NAIVE_76 82.1
B_CELL_NAIVE_77 81.4
B_CELL_NAIVE_78 81.3
B_CELL_NAIVE_79 81.3
B_CELL_NAIVE_80 80.3
B_CELL_NAIVE_81 79.1
B_CELL_NAIVE_82 77.5
B_CELL_NAIVE_83 76.5
B_CELL_NAIVE_84 74.9
B_CELL_NAIVE_85 74.0
B_CELL_NAIVE_86 73.0
B_CELL_NAIVE_87 72.0
B_CELL_NAIVE_88 71.1
B_CELL_NAIVE_89 69.2
B_CELL_NAIVE_90 67.8
B_CELL_NAIVE_91 55.4
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