MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:33.5 nTPM
GTEx:7.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:4.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2019 Male, age 18, unknown 8.9
1827 Male, age 72, unknown 7.8
2586 Male, age 75, left hemisphere 6.3
2219 Male, age 76, both hemispheres 6.2
1833 Male, age 53, unknown 6.1
2411 Female, age 72, unknown 5.9
1870 Female, age 42, unknown 5.8
1830 Male, age 51, unknown 5.2
2666 Male, age 74, left hemisphere 5.2
2828 Female, age 72, unknown 5.2
Dorsal raphe nucleus
nTPM: 19.1
2298 Female, age 72, unknown 32.5
2016 Female, age 72, unknown 31.8
1828 Male, age 53, unknown 17.4
2047 Male, age 72, unknown 8.4
2750 Male, age 76, both hemispheres 5.2
Inferior colliculus
nTPM: 7.2
2849 Male, age 72, unknown 9.2
1890 Male, age 53, unknown 7.2
1848 Female, age 42, unknown 6.3
2097 Female, age 72, unknown 5.9
Median raphe nucleus
nTPM: 8.5
2220 Male, age 76, midline 8.5
Periaquaductal grey, anterior
nTPM: 16.4
1795 Male, age 51, unknown 30.4
1947 Male, age 18, unknown 9.8
2502 Female, age 75, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 21.6
2850 Male, age 76, both hemispheres 39.5
1840 Male, age 53, unknown 22.4
1831 Male, age 72, unknown 12.6
2464 Female, age 72, unknown 12.0
Periaquaductal grey, lateral
nTPM: 33.5
2272 Male, age 74, both hemispheres 60.6
2140 Male, age 76, both hemispheres 27.8
2053 Male, age 18, unknown 12.0
Pretectal area
nTPM: 12.4
2273 Male, age 74, both hemispheres 48.7
2224 Female, age 72, unknown 21.5
2825 Male, age 18, unknown 10.8
2667 Female, age 75, unknown 10.3
2316 Male, age 76, right hemisphere 8.3
2407 Male, age 75, both hemispheres 7.5
1815 Male, age 53, unknown 6.4
1817 Female, age 42, unknown 6.2
1816 Male, age 51, unknown 6.1
2007 Male, age 72, unknown 5.8
1944 Female, age 72, unknown 5.2
Red nucleus
nTPM: 6.8
2725 Female, age 75, unknown 10.1
2785 Male, age 18, unknown 9.0
1865 Male, age 51, unknown 7.6
1904 Male, age 53, unknown 7.2
2769 Male, age 72, unknown 7.2
1954 Female, age 42, unknown 6.7
2227 Male, age 72, unknown 6.7
1821 Female, age 72, unknown 6.1
2823 Male, age 76, right hemisphere 5.8
2503 Female, age 72, unknown 5.1
2584 Male, age 75, left hemisphere 5.0
2588 Male, age 74, left hemisphere 4.6
Substantia nigra
nTPM: 6.5
2699 Male, age 18, unknown 9.2
2241 Male, age 72, unknown 7.9
2590 Female, age 75, unknown 7.6
1941 Male, age 53, unknown 7.0
1889 Female, age 72, unknown 6.4
2409 Female, age 72, unknown 6.1
2583 Male, age 75, right hemisphere 6.1
1916 Female, age 42, unknown 5.3
1851 Male, age 51, unknown 5.1
2665 Male, age 74, both hemispheres 4.4
Superior colliculus
nTPM: 9.1
1995 Male, age 72, unknown 17.7
2587 Male, age 74, left hemisphere 14.5
2664 Male, age 75, both hemispheres 9.7
2261 Male, age 18, unknown 9.3
1913 Female, age 42, unknown 8.3
2668 Female, age 75, unknown 6.9
1839 Male, age 51, unknown 6.6
1796 Male, age 53, unknown 6.4
2087 Female, age 72, unknown 6.2
1895 Male, age 76, right hemisphere 5.3
Ventral tegmental area
nTPM: 6.5
2021 Male, age 53, unknown 8.1
1942 Male, age 51, unknown 7.3
1915 Female, age 42, unknown 6.6
2218 Male, age 76, both hemispheres 5.7
2410 Female, age 72, unknown 5.6
2223 Female, age 72, unknown 5.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 183

Max nTPM: 37.5
Min nTPM: 2.9
Std nTPM: 3.5
Median nTPM: 7.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 37.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 34.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 13.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 12.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 12.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 12.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 11.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 11.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 11.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.4
Sample A Female 0.9
Sample B Female 0.4
Sample C Male 1.4
Sample D Male 0.9
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 3.2
Min nTPM: 0.9
Sample A Female 2.1
Sample B Female 3.2
Sample C Male 0.9
Sample D Male 1.0
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 18.2
Min nTPM: 9.3
Sample B Female 9.3
Sample C Male 18.2
Sample D Male 17.9
Superior colliculi
nTPM: 1.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 0.8
Sample A Female 1.1
Sample B Female 2.7
Sample C Male 0.8
Sample D Male 0.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.0
Sample A Male 3.5
Sample B Male 3.9
Sample C Female 3.0
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69114516 Antisense, RP_050317_01_G07, Mouse strain C57BL/6J (56 days, male) 0.1

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