A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
69.0
nTPM
Monaco:
449.0
nTPM
Schmiedel:
372.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.0
HPA sample
nTPM
NK-cell nTPM: 69.0
Samples: 6
Max nTPM: 113.9
Min nTPM: 35.9
P10809_1013
35.9
P10809_1033
68.7
P10809_1052
45.9
P10809_1071
70.2
P10809_1093
113.9
P10809_1103
79.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
449.0
Monaco sample
nTPM
NK-cell nTPM: 449.0
Samples: 4
Max nTPM: 577.4
Min nTPM: 298.6
RHH5316_R3683
498.5
RHH5224_R3596
298.6
RHH5253_R3625
577.4
RHH5282_R3654
421.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
372.9
Schmiedel sample id
TPM
NK-cell TPM: 372.9
Samples: 90
Max TPM: 515.5
Min TPM: 286.8
NK_1
515.5
NK_2
507.8
NK_3
481.0
NK_4
477.1
NK_5
448.3
NK_6
444.0
NK_7
443.4
NK_8
436.7
NK_9
428.0
NK_10
426.9
NK_11
425.1
NK_12
424.8
NK_13
424.5
NK_14
421.9
NK_15
420.2
NK_16
419.9
NK_17
419.8
NK_18
418.1
NK_19
417.2
NK_20
405.5
NK_21
403.1
NK_22
402.5
NK_23
400.8
NK_24
399.7
NK_25
397.5
NK_26
396.1
NK_27
396.0
NK_28
394.0
NK_29
393.6
NK_30
392.7
NK_31
392.0
NK_32
391.8
NK_33
390.6
NK_34
389.8
NK_35
389.1
NK_36
387.7
NK_37
386.2
NK_38
385.3
NK_39
381.8
NK_40
379.2
NK_41
378.4
NK_42
378.2
NK_43
377.4
NK_44
376.4
NK_45
375.3
NK_46
372.6
NK_47
370.7
NK_48
367.9
NK_49
367.9
NK_50
365.2
NK_51
364.5
NK_52
362.4
NK_53
358.1
NK_54
357.1
NK_55
356.5
NK_56
356.0
NK_57
355.0
NK_58
354.7
NK_59
354.6
NK_60
351.6
NK_61
343.2
NK_62
341.9
NK_63
341.4
NK_64
340.2
NK_65
338.0
NK_66
337.8
NK_67
337.4
NK_68
333.7
NK_69
331.3
NK_70
330.2
NK_71
328.9
NK_72
328.1
NK_73
327.6
NK_74
327.5
NK_75
325.8
NK_76
322.8
NK_77
319.8
NK_78
315.0
NK_79
314.3
NK_80
313.0
NK_81
312.0
NK_82
308.7
NK_83
306.1
NK_84
304.9
NK_85
303.0
NK_86
302.5
NK_87
297.6
NK_88
295.3
NK_89
289.3
NK_90
286.8
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