A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
84.8
nTPM
Schmiedel:
103.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
Classical monocyte nTPM: 6.3
Samples: 6
Max nTPM: 9.3
Min nTPM: 4.7
P10809_1003
4.7
P10809_1020
6.0
P10809_1039
9.3
P10809_1058
6.7
P10809_1080
5.2
P10809_1107
6.1
Intermediate monocyte nTPM: 5.5
Samples: 6
Max nTPM: 7.0
Min nTPM: 4.2
P10809_1004
5.2
P10809_1023
4.2
P10809_1042
5.8
P10809_1061
5.7
P10809_1081
4.9
P10809_1108
7.0
Non-classical monocyte nTPM: 4.2
Samples: 5
Max nTPM: 6.3
Min nTPM: 0.6
P10809_1005
4.3
P10809_1053
5.1
P10809_1072
0.6
P10809_1082
6.3
P10809_1109
4.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.8
Monaco sample
nTPM
Classical monocyte nTPM: 72.8
Samples: 4
Max nTPM: 91.0
Min nTPM: 39.9
RHH5313_R3680
91.0
RHH5221_R3593
87.5
RHH5250_R3622
39.9
RHH5279_R3651
72.8
Intermediate monocyte nTPM: 84.8
Samples: 4
Max nTPM: 134.9
Min nTPM: 59.4
RHH5314_R3681
72.7
RHH5222_R3594
59.4
RHH5251_R3623
134.9
RHH5280_R3652
72.1
Non-classical monocyte nTPM: 75.0
Samples: 4
Max nTPM: 87.3
Min nTPM: 54.3
RHH5315_R3682
54.3
RHH5223_R3595
83.3
RHH5252_R3624
75.1
RHH5281_R3653
87.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.5
Schmiedel sample id
TPM
Classical monocyte TPM: 95.2
Samples: 91
Max TPM: 126.9
Min TPM: 68.7
MONOCYTES_1
126.9
MONOCYTES_2
124.5
MONOCYTES_3
121.9
MONOCYTES_4
121.9
MONOCYTES_5
119.3
MONOCYTES_6
112.3
MONOCYTES_7
112.2
MONOCYTES_8
110.2
MONOCYTES_9
110.2
MONOCYTES_10
109.9
MONOCYTES_11
109.6
MONOCYTES_12
109.5
MONOCYTES_13
108.7
MONOCYTES_14
108.5
MONOCYTES_15
107.3
MONOCYTES_16
106.5
MONOCYTES_17
105.6
MONOCYTES_18
104.9
MONOCYTES_19
104.5
MONOCYTES_20
104.0
MONOCYTES_21
103.7
MONOCYTES_22
103.3
MONOCYTES_23
101.5
MONOCYTES_24
101.1
MONOCYTES_25
100.6
MONOCYTES_26
100.4
MONOCYTES_27
100.2
MONOCYTES_28
99.4
MONOCYTES_29
99.3
MONOCYTES_30
99.1
MONOCYTES_31
98.8
MONOCYTES_32
98.4
MONOCYTES_33
98.4
MONOCYTES_34
98.4
MONOCYTES_35
98.3
MONOCYTES_36
97.9
MONOCYTES_37
97.7
MONOCYTES_38
97.4
MONOCYTES_39
97.3
MONOCYTES_40
97.1
MONOCYTES_41
97.0
MONOCYTES_42
95.9
MONOCYTES_43
95.8
MONOCYTES_44
95.5
MONOCYTES_45
94.8
MONOCYTES_46
94.6
MONOCYTES_47
94.4
MONOCYTES_48
94.2
MONOCYTES_49
93.9
MONOCYTES_50
93.9
MONOCYTES_51
93.8
MONOCYTES_52
93.3
MONOCYTES_53
92.3
MONOCYTES_54
92.1
MONOCYTES_55
91.8
MONOCYTES_56
91.5
MONOCYTES_57
91.0
MONOCYTES_58
90.6
MONOCYTES_59
90.5
MONOCYTES_60
90.0
MONOCYTES_61
89.9
MONOCYTES_62
89.5
MONOCYTES_63
88.6
MONOCYTES_64
88.5
MONOCYTES_65
88.4
MONOCYTES_66
87.5
MONOCYTES_67
87.4
MONOCYTES_68
87.2
MONOCYTES_69
87.1
MONOCYTES_70
86.6
MONOCYTES_71
86.5
MONOCYTES_72
85.6
MONOCYTES_73
85.4
MONOCYTES_74
85.3
MONOCYTES_75
84.8
MONOCYTES_76
84.7
MONOCYTES_77
84.5
MONOCYTES_78
82.9
MONOCYTES_79
82.5
MONOCYTES_80
82.1
MONOCYTES_81
80.8
MONOCYTES_82
80.5
MONOCYTES_83
80.3
MONOCYTES_84
79.3
MONOCYTES_85
79.3
MONOCYTES_86
78.1
MONOCYTES_87
77.8
MONOCYTES_88
76.6
MONOCYTES_89
75.6
MONOCYTES_90
69.3
MONOCYTES_91
68.7
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Non-classical monocyte TPM: 103.5
Samples: 90
Max TPM: 136.1
Min TPM: 74.3
M2_1
136.1
M2_2
133.8
M2_3
132.9
M2_4
132.6
M2_5
132.1
M2_6
130.4
M2_7
128.8
M2_8
126.8
M2_9
125.8
M2_10
124.0
M2_11
123.0
M2_12
122.6
M2_13
122.5
M2_14
119.6
M2_15
119.1
M2_16
118.3
M2_17
118.1
M2_18
117.6
M2_19
115.8
M2_20
114.9
M2_21
114.6
M2_22
114.1
M2_23
113.8
M2_24
113.2
M2_25
111.8
M2_26
110.8
M2_27
110.7
M2_28
110.2
M2_29
108.9
M2_30
107.7
M2_31
107.1
M2_32
106.1
M2_33
106.1
M2_34
105.9
M2_35
105.8
M2_36
105.7
M2_37
105.1
M2_38
105.1
M2_39
105.1
M2_40
104.8
M2_41
104.6
M2_42
104.4
M2_43
103.3
M2_44
103.3
M2_45
103.2
M2_46
101.4
M2_47
101.2
M2_48
100.9
M2_49
100.4
M2_50
100.3
M2_51
100.3
M2_52
100.1
M2_53
99.9
M2_54
99.8
M2_55
99.6
M2_56
98.6
M2_57
97.4
M2_58
97.0
M2_59
96.9
M2_60
96.4
M2_61
95.8
M2_62
95.8
M2_63
95.5
M2_64
94.9
M2_65
94.3
M2_66
93.6
M2_67
93.0
M2_68
92.9
M2_69
92.8
M2_70
92.5
M2_71
92.4
M2_72
92.4
M2_73
90.2
M2_74
89.9
M2_75
89.2
M2_76
88.5
M2_77
88.0
M2_78
87.6
M2_79
86.6
M2_80
86.2
M2_81
85.9
M2_82
85.3
M2_83
84.3
M2_84
83.1
M2_85
80.0
M2_86
79.2
M2_87
78.6
M2_88
77.1
M2_89
75.7
M2_90
74.3
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