On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
5.7
nTPM
HPA Brain:
62.2
nTPM
GTEx:
5.7
nTPM
FANTOM5:
33.2
Scaled Tags Per Million
Macaque:
51.5
nTPM
Mouse:
34.5
nTPM
Rat:
22.9
nTPM
Pig:
27.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 45.9
2586
Male, age 75, left hemisphere
67.3
1827
Male, age 72, unknown
55.4
2019
Male, age 18, unknown
50.8
2666
Male, age 74, left hemisphere
49.9
2828
Female, age 72, unknown
46.4
2219
Male, age 76, both hemispheres
41.3
1833
Male, age 53, unknown
39.3
1830
Male, age 51, unknown
38.4
1870
Female, age 42, unknown
36.5
2411
Female, age 72, unknown
34.0
Dorsal raphe nucleus nTPM: 35.4
2298
Female, age 72, unknown
36.2
2750
Male, age 76, both hemispheres
36.0
2047
Male, age 72, unknown
35.7
1828
Male, age 53, unknown
34.6
2016
Female, age 72, unknown
34.3
Inferior colliculus nTPM: 54.3
1848
Female, age 42, unknown
56.9
2849
Male, age 72, unknown
56.8
2097
Female, age 72, unknown
53.7
1890
Male, age 53, unknown
50.0
Median raphe nucleus nTPM: 36.9
2220
Male, age 76, midline
36.9
Periaquaductal grey, anterior nTPM: 55.6
2502
Female, age 75, unknown
57.7
1947
Male, age 18, unknown
56.5
1795
Male, age 51, unknown
52.4
Periaquaductal grey, dorsal nTPM: 48.4
1831
Male, age 72, unknown
54.1
1840
Male, age 53, unknown
52.3
2850
Male, age 76, both hemispheres
43.9
2464
Female, age 72, unknown
43.5
Periaquaductal grey, lateral nTPM: 45.8
2053
Male, age 18, unknown
50.9
2140
Male, age 76, both hemispheres
47.5
2272
Male, age 74, both hemispheres
38.9
Pretectal area nTPM: 62.2
1816
Male, age 51, unknown
99.1
1944
Female, age 72, unknown
87.7
1817
Female, age 42, unknown
76.0
2007
Male, age 72, unknown
73.5
1815
Male, age 53, unknown
66.5
2667
Female, age 75, unknown
54.7
2407
Male, age 75, both hemispheres
53.6
2316
Male, age 76, right hemisphere
48.6
2825
Male, age 18, unknown
45.7
2273
Male, age 74, both hemispheres
41.6
2224
Female, age 72, unknown
37.5
Red nucleus nTPM: 44.0
2584
Male, age 75, left hemisphere
54.6
2785
Male, age 18, unknown
53.0
2588
Male, age 74, left hemisphere
49.8
2823
Male, age 76, right hemisphere
49.3
2725
Female, age 75, unknown
47.0
2503
Female, age 72, unknown
43.0
1954
Female, age 42, unknown
40.9
1865
Male, age 51, unknown
40.2
1904
Male, age 53, unknown
39.1
1821
Female, age 72, unknown
38.0
2227
Male, age 72, unknown
37.3
2769
Male, age 72, unknown
35.2
Substantia nigra nTPM: 43.2
1889
Female, age 72, unknown
60.7
1941
Male, age 53, unknown
54.3
2665
Male, age 74, both hemispheres
53.8
2583
Male, age 75, right hemisphere
48.8
2590
Female, age 75, unknown
48.8
2409
Female, age 72, unknown
35.1
1916
Female, age 42, unknown
34.4
1851
Male, age 51, unknown
34.0
2241
Male, age 72, unknown
33.7
2699
Male, age 18, unknown
28.3
Superior colliculus nTPM: 57.2
2087
Female, age 72, unknown
76.3
2261
Male, age 18, unknown
69.3
2664
Male, age 75, both hemispheres
59.7
1796
Male, age 53, unknown
57.4
1995
Male, age 72, unknown
56.1
1895
Male, age 76, right hemisphere
54.8
1913
Female, age 42, unknown
52.1
1839
Male, age 51, unknown
50.5
2587
Male, age 74, left hemisphere
49.1
2668
Female, age 75, unknown
47.2
Ventral tegmental area nTPM: 36.5
2218
Male, age 76, both hemispheres
41.0
1942
Male, age 51, unknown
40.3
2410
Female, age 72, unknown
38.2
2223
Female, age 72, unknown
34.4
1915
Female, age 42, unknown
32.7
2021
Male, age 53, unknown
32.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 5.7
Samples: 183
Max nTPM: 17.3
Min nTPM: 3.0
Std nTPM: 1.8
Median nTPM: 5.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
17.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
13.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
12.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
10.4
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
10.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
9.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
8.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
8.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
8.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
8.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
8.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
8.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
7.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
7.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
7.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
7.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
7.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
7.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
7.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
6.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
6.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
6.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
6.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
6.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
6.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
6.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
6.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
6.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
6.4
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
6.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
6.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
6.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
6.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
6.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
6.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
6.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
6.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
6.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
6.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
6.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
6.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
5.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
5.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
5.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
5.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
5.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
5.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
5.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
5.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
5.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
5.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
5.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
5.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
5.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
5.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
5.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
5.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
5.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
5.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
5.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
5.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
5.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
5.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
5.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
5.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
5.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
5.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
5.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
5.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
5.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
5.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
5.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
5.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
5.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
5.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
5.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
5.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
5.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
5.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
5.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
5.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
5.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
5.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
5.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
5.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
5.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
5.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
5.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4.9
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
4.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
4.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
4.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
4.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
4.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
4.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
4.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
4.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
4.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
4.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
4.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.6
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
4.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
4.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
4.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
4.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
4.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
4.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
4.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
4.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
4.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
4.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
4.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
4.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
4.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
4.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
4.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
4.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
4.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
4.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
4.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
4.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
4.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
4.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
4.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
4.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
4.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
4.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
4.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
3.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
3.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
3.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
3.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
3.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
3.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
3.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
3.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 26.0
Samples: 1
Max nTPM: 26.0
Min nTPM: 26.0
Sample A
26.0
Midbrain nTPM: 36.0
Samples: 1
Max nTPM: 36.0
Min nTPM: 36.0
Sample A
36.0
Superior colliculi nTPM: 51.5
Samples: 1
Max nTPM: 51.5
Min nTPM: 51.5
Sample A
51.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 14.9
Samples: 3
Max nTPM: 15.4
Min nTPM: 14.5
Sample A
Female
14.9
Sample B
Female
14.5
Sample C
Male
15.4
Midbrain nTPM: 27.3
Samples: 3
Max nTPM: 43.0
Min nTPM: 13.6
Sample B
Female
13.6
Sample C
Male
43.0
Sample D
Male
25.3
Periaqueductal gray nTPM: 13.8
Samples: 3
Max nTPM: 14.3
Min nTPM: 12.8
Sample B
Female
14.3
Sample C
Male
14.3
Sample D
Male
12.8
Superior colliculi nTPM: 22.6
Samples: 4
Max nTPM: 28.8
Min nTPM: 18.1
Sample A
Female
18.1
Sample B
Female
18.4
Sample C
Male
28.8
Sample D
Male
25.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 34.5
Samples: 4
Max nTPM: 36.6
Min nTPM: 30.9
Sample A
30.9
Sample B
33.9
Sample C
36.6
Sample D
36.6
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 22.9
Samples: 4
Max nTPM: 25.0
Min nTPM: 22.0
Sample A
25.0
Sample A
22.0
Sample A
22.2
Sample A
22.4
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The Human Protein Atlas project is funded
