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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.5
Sample id
Sample description
nTPM
Amygdala nTPM: 18.5
2517
Female, age 94, left hemisphere
23.9
1987
Female, age 91, left hemisphere
23.4
2514
Male, age 75, right hemisphere
16.5
2814
Male, age 76, right hemisphere
15.5
2695
Female, age 67, right hemisphere
13.0
Basal amygdala nTPM: 29.2
2685
Female, age 94, left hemisphere
38.3
2243
Female, age 91, right hemisphere
35.9
2827
Female, age 67, right hemisphere
35.5
2110
Male, age 80, left hemisphere
29.0
2609
Male, age 75, right hemisphere
19.4
1955
Male, age 76, both hemispheres
17.0
Central amygdala nTPM: 23.8
2239
Male, age 80, left hemisphere
33.3
2826
Female, age 94, left hemisphere
26.5
2701
Female, age 91, right hemisphere
23.5
2515
Male, age 75, right hemisphere
23.0
1905
Male, age 76, both hemispheres
12.5
Corticomedial amygdala nTPM: 29.5
2535
Female, age 67, right hemisphere
50.0
2829
Male, age 80, left hemisphere
33.0
2242
Female, age 91, right hemisphere
31.6
2429
Female, age 94, left hemisphere
28.3
2240
Male, age 76, both hemispheres
17.2
2428
Male, age 75, right hemisphere
17.1
Lateral amygdala nTPM: 23.9
2255
Female, age 91, right hemisphere
30.4
2256
Male, age 80, left hemisphere
27.3
2534
Female, age 94, left hemisphere
25.6
2830
Female, age 67, right hemisphere
24.5
2516
Male, age 75, right hemisphere
18.2
1883
Male, age 76, both hemispheres
17.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 17.7
Samples: 181
Max nTPM: 49.9
Min nTPM: 5.6
Std nTPM: 6.8
Median nTPM: 16.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
49.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
41.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
40.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
39.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
35.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
34.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
33.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
30.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
29.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
29.4
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
29.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
28.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
28.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
27.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
27.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
27.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
27.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
26.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
26.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
25.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
25.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
24.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
24.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
24.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
24.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
24.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
24.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
24.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
23.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
23.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
23.4
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
23.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
22.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
22.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
22.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
22.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
21.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
21.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
21.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
21.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
21.7
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
21.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
21.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
21.0
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
20.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
20.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
20.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
20.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
20.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
20.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
20.0
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
19.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
19.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
19.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
19.4
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
19.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
19.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
19.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
19.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
19.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
18.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
18.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
18.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
18.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
18.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
18.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
18.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
18.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
18.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
18.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
18.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
18.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
17.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
17.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
17.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
17.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
17.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
17.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
17.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
17.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
17.2
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
17.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
17.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
17.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
17.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
17.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
17.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
16.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
16.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
16.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
16.7
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
16.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
16.6
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
16.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
16.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
16.4
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
16.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
16.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
16.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
16.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
16.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
15.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
15.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
15.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
15.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
15.6
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
15.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
15.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
15.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
15.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
15.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
15.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
15.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
15.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
15.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
15.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
15.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
15.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
14.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
14.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
14.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
14.5
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
14.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
14.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
14.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
13.8
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
13.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
13.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
13.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
13.5
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
13.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
13.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
13.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
13.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
13.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
13.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
13.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
13.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
13.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
13.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
13.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
12.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
12.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
12.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
12.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
12.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
12.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
12.2
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
12.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
11.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
11.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
11.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
11.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
11.5
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
11.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
11.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
11.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
11.1
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
11.0
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
10.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
10.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
10.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
10.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
10.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
9.9
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
9.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
9.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
9.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
9.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
8.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
8.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
8.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
8.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
8.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
8.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
8.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
7.9
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
7.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
7.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
5.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 29.4
Samples: 4
Max nTPM: 45.1
Min nTPM: 19.8
Sample A
Female
45.1
Sample B
Female
19.8
Sample C
Male
25.6
Sample D
Male
27.2
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 52.6
Samples: 4
Max nTPM: 55.1
Min nTPM: 49.7
Sample A
Male
51.4
Sample B
Male
54.2
Sample C
Female
49.7
Sample D
Female
55.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
