MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA Brain:67.0 nTPM
GTEx:28.5 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:108.3 nTPM
Mouse:42.7 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2666 Male, age 74, left hemisphere 64.9
1870 Female, age 42, unknown 62.8
1830 Male, age 51, unknown 61.0
1833 Male, age 53, unknown 60.8
2411 Female, age 72, unknown 60.6
1827 Male, age 72, unknown 59.9
2586 Male, age 75, left hemisphere 59.9
2828 Female, age 72, unknown 56.7
2219 Male, age 76, both hemispheres 54.3
2019 Male, age 18, unknown 50.9
Dorsal raphe nucleus
nTPM: 57.7
2750 Male, age 76, both hemispheres 60.7
2047 Male, age 72, unknown 58.9
2016 Female, age 72, unknown 57.6
1828 Male, age 53, unknown 57.3
2298 Female, age 72, unknown 54.2
Inferior colliculus
nTPM: 56.1
2849 Male, age 72, unknown 59.4
1848 Female, age 42, unknown 57.2
1890 Male, age 53, unknown 54.8
2097 Female, age 72, unknown 53.1
Median raphe nucleus
nTPM: 61.5
2220 Male, age 76, midline 61.5
Periaquaductal grey, anterior
nTPM: 58.9
1947 Male, age 18, unknown 67.1
2502 Female, age 75, unknown 55.1
1795 Male, age 51, unknown 54.6
Periaquaductal grey, dorsal
nTPM: 55.3
1840 Male, age 53, unknown 58.1
2850 Male, age 76, both hemispheres 57.8
2464 Female, age 72, unknown 53.9
1831 Male, age 72, unknown 51.4
Periaquaductal grey, lateral
nTPM: 51.3
2140 Male, age 76, both hemispheres 54.8
2053 Male, age 18, unknown 52.8
2272 Male, age 74, both hemispheres 46.2
Pretectal area
nTPM: 54.8
2825 Male, age 18, unknown 60.0
1816 Male, age 51, unknown 57.8
2224 Female, age 72, unknown 57.3
1815 Male, age 53, unknown 55.5
1944 Female, age 72, unknown 54.8
1817 Female, age 42, unknown 54.6
2407 Male, age 75, both hemispheres 54.2
2667 Female, age 75, unknown 53.8
2007 Male, age 72, unknown 52.6
2316 Male, age 76, right hemisphere 52.6
2273 Male, age 74, both hemispheres 49.6
Red nucleus
nTPM: 58.4
2588 Male, age 74, left hemisphere 66.0
1821 Female, age 72, unknown 65.7
2725 Female, age 75, unknown 62.3
2503 Female, age 72, unknown 61.5
1954 Female, age 42, unknown 59.5
2227 Male, age 72, unknown 59.4
1904 Male, age 53, unknown 58.2
2769 Male, age 72, unknown 58.0
1865 Male, age 51, unknown 57.0
2823 Male, age 76, right hemisphere 54.8
2584 Male, age 75, left hemisphere 49.3
2785 Male, age 18, unknown 48.9
Substantia nigra
nTPM: 67.0
2241 Male, age 72, unknown 78.8
1916 Female, age 42, unknown 77.2
2665 Male, age 74, both hemispheres 70.2
1851 Male, age 51, unknown 69.2
2699 Male, age 18, unknown 69.1
1941 Male, age 53, unknown 65.5
2590 Female, age 75, unknown 63.7
2409 Female, age 72, unknown 62.4
1889 Female, age 72, unknown 58.0
2583 Male, age 75, right hemisphere 56.3
Superior colliculus
nTPM: 54.6
2587 Male, age 74, left hemisphere 60.7
2668 Female, age 75, unknown 57.7
1839 Male, age 51, unknown 57.0
1796 Male, age 53, unknown 56.9
2261 Male, age 18, unknown 56.0
1895 Male, age 76, right hemisphere 53.5
2087 Female, age 72, unknown 53.1
2664 Male, age 75, both hemispheres 52.9
1913 Female, age 42, unknown 52.4
1995 Male, age 72, unknown 46.1
Ventral tegmental area
nTPM: 60.5
1915 Female, age 42, unknown 65.2
2410 Female, age 72, unknown 65.1
2218 Male, age 76, both hemispheres 62.0
2223 Female, age 72, unknown 59.5
1942 Male, age 51, unknown 55.9
2021 Male, age 53, unknown 55.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.5
Samples: 183

Max nTPM: 42.7
Min nTPM: 16.0
Std nTPM: 4.5
Median nTPM: 28.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 42.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 40.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 38.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 37.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 37.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 36.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 36.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 108.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.6
Samples: 4

Max nTPM: 132.3
Min nTPM: 74.1
Sample A Female 132.3
Sample B Female 89.6
Sample C Male 110.5
Sample D Male 74.1
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 125.4
Min nTPM: 88.0
Sample A Female 89.8
Sample B Female 125.4
Sample C Male 88.0
Sample D Male 116.2
Periaqueductal gray
nTPM: 102.4
Samples: 3

Max nTPM: 111.0
Min nTPM: 93.6
Sample B Female 111.0
Sample C Male 102.6
Sample D Male 93.6
Superior colliculi
nTPM: 108.4
Samples: 4

Max nTPM: 129.9
Min nTPM: 81.0
Sample A Female 129.9
Sample B Female 81.0
Sample C Male 102.0
Sample D Male 120.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 44.3
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 43.8
Sample C Female 44.3
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70473969 Antisense, RP_050614_04_F06, Mouse strain C57BL/6J (56 days, male) 0.9
71211278 Antisense, RP_050816_01_B02, Mouse strain C57BL/6J (56 days, male) 0.6

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