MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.6 nTPM
HPA Brain:61.6 nTPM
GTEx:62.6 nTPM
FANTOM5:163.9 Scaled Tags Per Million
Pig:151.5 nTPM
Mouse:45.8 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.1
2666 Male, age 74, left hemisphere 64.7
1830 Male, age 51, unknown 56.4
1833 Male, age 53, unknown 55.5
2828 Female, age 72, unknown 53.8
2019 Male, age 18, unknown 53.1
2411 Female, age 72, unknown 52.6
2219 Male, age 76, both hemispheres 46.7
1870 Female, age 42, unknown 45.8
1827 Male, age 72, unknown 41.2
2586 Male, age 75, left hemisphere 20.9
Dorsal raphe nucleus
nTPM: 48.9
2750 Male, age 76, both hemispheres 56.7
2298 Female, age 72, unknown 47.8
1828 Male, age 53, unknown 47.6
2047 Male, age 72, unknown 47.1
2016 Female, age 72, unknown 45.3
Inferior colliculus
nTPM: 61.6
1890 Male, age 53, unknown 86.2
1848 Female, age 42, unknown 59.0
2097 Female, age 72, unknown 56.3
2849 Male, age 72, unknown 45.1
Median raphe nucleus
nTPM: 46.7
2220 Male, age 76, midline 46.7
Periaquaductal grey, anterior
nTPM: 48.4
2502 Female, age 75, unknown 54.2
1947 Male, age 18, unknown 53.5
1795 Male, age 51, unknown 37.4
Periaquaductal grey, dorsal
nTPM: 49.6
1831 Male, age 72, unknown 62.7
2464 Female, age 72, unknown 49.9
2850 Male, age 76, both hemispheres 48.4
1840 Male, age 53, unknown 37.4
Periaquaductal grey, lateral
nTPM: 52.7
2140 Male, age 76, both hemispheres 56.4
2053 Male, age 18, unknown 54.7
2272 Male, age 74, both hemispheres 46.9
Pretectal area
nTPM: 50.2
1817 Female, age 42, unknown 65.1
2667 Female, age 75, unknown 60.8
2316 Male, age 76, right hemisphere 58.2
1944 Female, age 72, unknown 55.5
1815 Male, age 53, unknown 53.7
2224 Female, age 72, unknown 48.0
2007 Male, age 72, unknown 47.9
1816 Male, age 51, unknown 46.4
2825 Male, age 18, unknown 45.2
2273 Male, age 74, both hemispheres 41.7
2407 Male, age 75, both hemispheres 29.8
Red nucleus
nTPM: 59.3
1904 Male, age 53, unknown 73.4
2588 Male, age 74, left hemisphere 71.0
1954 Female, age 42, unknown 68.6
1821 Female, age 72, unknown 68.1
1865 Male, age 51, unknown 63.4
2823 Male, age 76, right hemisphere 62.2
2227 Male, age 72, unknown 61.9
2503 Female, age 72, unknown 58.3
2769 Male, age 72, unknown 55.0
2785 Male, age 18, unknown 52.0
2584 Male, age 75, left hemisphere 39.8
2725 Female, age 75, unknown 37.6
Substantia nigra
nTPM: 54.5
2665 Male, age 74, both hemispheres 83.8
2241 Male, age 72, unknown 66.5
2409 Female, age 72, unknown 65.6
1851 Male, age 51, unknown 60.0
2699 Male, age 18, unknown 53.2
1889 Female, age 72, unknown 50.6
2590 Female, age 75, unknown 49.9
1916 Female, age 42, unknown 45.8
1941 Male, age 53, unknown 35.8
2583 Male, age 75, right hemisphere 34.1
Superior colliculus
nTPM: 50.2
2087 Female, age 72, unknown 65.4
1895 Male, age 76, right hemisphere 62.8
2668 Female, age 75, unknown 56.7
1913 Female, age 42, unknown 55.2
2587 Male, age 74, left hemisphere 53.9
1839 Male, age 51, unknown 49.1
1995 Male, age 72, unknown 48.4
2261 Male, age 18, unknown 44.9
1796 Male, age 53, unknown 42.9
2664 Male, age 75, both hemispheres 23.2
Ventral tegmental area
nTPM: 59.3
1915 Female, age 42, unknown 66.8
2218 Male, age 76, both hemispheres 63.3
2223 Female, age 72, unknown 61.3
2021 Male, age 53, unknown 56.6
2410 Female, age 72, unknown 54.3
1942 Male, age 51, unknown 53.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.6
Samples: 183

Max nTPM: 200.6
Min nTPM: 8.2
Std nTPM: 32.0
Median nTPM: 58.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 200.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 196.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 182.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 158.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 152.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 137.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 128.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 119.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 114.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 114.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 113.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 163.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.9
FF:10158-103A5 76 years, female 163.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 151.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.1
Samples: 4

Max nTPM: 237.2
Min nTPM: 32.3
Sample A Female 58.0
Sample B Female 237.2
Sample C Male 32.3
Sample D Male 40.7
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 51.4
Min nTPM: 19.1
Sample A Female 32.9
Sample B Female 32.4
Sample C Male 51.4
Sample D Male 19.1
Periaqueductal gray
nTPM: 11.5
Samples: 3

Max nTPM: 13.2
Min nTPM: 10.4
Sample B Female 13.2
Sample C Male 10.8
Sample D Male 10.4
Superior colliculi
nTPM: 151.5
Samples: 4

Max nTPM: 417.6
Min nTPM: 36.9
Sample A Female 99.3
Sample B Female 417.6
Sample C Male 52.2
Sample D Male 36.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 52.3
Min nTPM: 43.2
Sample A Male 52.3
Sample B Male 44.6
Sample C Female 43.2
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
329 Antisense, RP_Baylor_102722, Mouse strain C57BL/6J (56 days, male) 1.8
79761045 Antisense, RP_071204_04_A02, Mouse strain C57BL/6J (56 days, male) 1.8
330 Antisense, RP_Baylor_102722, Mouse strain C57BL/6J (56 days, male) 1.6

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