A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
27.6
nTPM
Schmiedel:
35.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Memory B-cell nTPM: 2.6
Samples: 6
Max nTPM: 3.9
Min nTPM: 0.5
P10809_1017
3.2
P10809_1025
1.2
P10809_1044
0.5
P10809_1063
3.4
P10809_1092
3.9
P10809_1105
3.4
Naive B-cell nTPM: 3.9
Samples: 6
Max nTPM: 6.0
Min nTPM: 0.0
P10809_1011
6.0
P10809_1029
4.5
P10809_1048
0.0
P10809_1067
5.1
P10809_1091
4.1
P10809_1104
3.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 12.8
Samples: 4
Max nTPM: 17.8
Min nTPM: 9.6
RHH5310_R3677
10.7
RHH5218_R3590
9.6
RHH5247_R3619
12.9
RHH5276_R3648
17.8
Naive B-cell nTPM: 27.6
Samples: 4
Max nTPM: 40.8
Min nTPM: 16.8
RHH5308_R3675
22.5
RHH5216_R3588
16.8
RHH5245_R3617
30.2
RHH5274_R3646
40.8
Non-switched memory B-cell nTPM: 15.9
Samples: 4
Max nTPM: 26.7
Min nTPM: 9.0
RHH5309_R3676
13.8
RHH5217_R3589
26.7
RHH5246_R3618
14.1
RHH5275_R3647
9.0
Plasmablast nTPM: 4.1
Samples: 4
Max nTPM: 9.8
Min nTPM: 1.3
RHH5312_R3679
9.8
RHH5220_R3592
1.3
RHH5249_R3621
2.4
RHH5278_R3650
2.7
Switched memory B-cell nTPM: 12.5
Samples: 4
Max nTPM: 13.4
Min nTPM: 11.5
RHH5311_R3678
13.2
RHH5219_R3591
13.4
RHH5248_R3620
11.5
RHH5277_R3649
11.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.6
Schmiedel sample id
TPM
Naive B-cell TPM: 35.6
Samples: 91
Max TPM: 56.5
Min TPM: 20.7
B_CELL_NAIVE_1
56.5
B_CELL_NAIVE_2
52.6
B_CELL_NAIVE_3
52.0
B_CELL_NAIVE_4
50.1
B_CELL_NAIVE_5
47.6
B_CELL_NAIVE_6
47.4
B_CELL_NAIVE_7
46.7
B_CELL_NAIVE_8
45.9
B_CELL_NAIVE_9
44.1
B_CELL_NAIVE_10
43.9
B_CELL_NAIVE_11
43.0
B_CELL_NAIVE_12
42.8
B_CELL_NAIVE_13
42.5
B_CELL_NAIVE_14
42.0
B_CELL_NAIVE_15
41.7
B_CELL_NAIVE_16
41.4
B_CELL_NAIVE_17
41.3
B_CELL_NAIVE_18
40.9
B_CELL_NAIVE_19
40.6
B_CELL_NAIVE_20
40.4
B_CELL_NAIVE_21
40.1
B_CELL_NAIVE_22
39.8
B_CELL_NAIVE_23
39.7
B_CELL_NAIVE_24
38.8
B_CELL_NAIVE_25
38.3
B_CELL_NAIVE_26
38.1
B_CELL_NAIVE_27
38.1
B_CELL_NAIVE_28
37.9
B_CELL_NAIVE_29
37.7
B_CELL_NAIVE_30
37.7
B_CELL_NAIVE_31
37.5
B_CELL_NAIVE_32
37.2
B_CELL_NAIVE_33
36.9
B_CELL_NAIVE_34
36.9
B_CELL_NAIVE_35
36.5
B_CELL_NAIVE_36
36.3
B_CELL_NAIVE_37
36.1
B_CELL_NAIVE_38
36.0
B_CELL_NAIVE_39
36.0
B_CELL_NAIVE_40
35.8
B_CELL_NAIVE_41
35.7
B_CELL_NAIVE_42
35.6
B_CELL_NAIVE_43
35.5
B_CELL_NAIVE_44
35.2
B_CELL_NAIVE_45
34.6
B_CELL_NAIVE_46
34.6
B_CELL_NAIVE_47
34.3
B_CELL_NAIVE_48
34.3
B_CELL_NAIVE_49
34.3
B_CELL_NAIVE_50
34.2
B_CELL_NAIVE_51
34.1
B_CELL_NAIVE_52
33.9
B_CELL_NAIVE_53
33.9
B_CELL_NAIVE_54
33.8
B_CELL_NAIVE_55
33.8
B_CELL_NAIVE_56
33.5
B_CELL_NAIVE_57
33.4
B_CELL_NAIVE_58
33.3
B_CELL_NAIVE_59
33.1
B_CELL_NAIVE_60
32.9
B_CELL_NAIVE_61
32.6
B_CELL_NAIVE_62
32.4
B_CELL_NAIVE_63
32.2
B_CELL_NAIVE_64
32.2
B_CELL_NAIVE_65
31.7
B_CELL_NAIVE_66
31.6
B_CELL_NAIVE_67
31.5
B_CELL_NAIVE_68
31.2
B_CELL_NAIVE_69
30.9
B_CELL_NAIVE_70
30.8
B_CELL_NAIVE_71
30.6
B_CELL_NAIVE_72
30.5
B_CELL_NAIVE_73
30.5
B_CELL_NAIVE_74
29.9
B_CELL_NAIVE_75
29.9
B_CELL_NAIVE_76
29.5
B_CELL_NAIVE_77
29.0
B_CELL_NAIVE_78
28.9
B_CELL_NAIVE_79
28.9
B_CELL_NAIVE_80
28.7
B_CELL_NAIVE_81
28.4
B_CELL_NAIVE_82
28.1
B_CELL_NAIVE_83
28.0
B_CELL_NAIVE_84
27.8
B_CELL_NAIVE_85
27.4
B_CELL_NAIVE_86
26.8
B_CELL_NAIVE_87
26.2
B_CELL_NAIVE_88
26.1
B_CELL_NAIVE_89
24.8
B_CELL_NAIVE_90
23.9
B_CELL_NAIVE_91
20.7
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The Human Protein Atlas project is funded
