MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.4 nTPM
HPA Brain:81.7 nTPM
GTEx:38.4 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.3
1830 Male, age 51, unknown 85.2
2411 Female, age 72, unknown 82.7
1833 Male, age 53, unknown 78.8
2019 Male, age 18, unknown 71.9
1870 Female, age 42, unknown 64.9
2586 Male, age 75, left hemisphere 62.9
2666 Male, age 74, left hemisphere 61.7
2828 Female, age 72, unknown 53.4
1827 Male, age 72, unknown 46.8
2219 Male, age 76, both hemispheres 45.1
Dorsal raphe nucleus
nTPM: 45.3
2750 Male, age 76, both hemispheres 93.1
2016 Female, age 72, unknown 43.4
1828 Male, age 53, unknown 42.5
2047 Male, age 72, unknown 29.7
2298 Female, age 72, unknown 17.8
Inferior colliculus
nTPM: 39.8
1890 Male, age 53, unknown 47.8
2849 Male, age 72, unknown 44.1
1848 Female, age 42, unknown 41.2
2097 Female, age 72, unknown 26.3
Median raphe nucleus
nTPM: 47.2
2220 Male, age 76, midline 47.2
Periaquaductal grey, anterior
nTPM: 33.0
1947 Male, age 18, unknown 38.9
1795 Male, age 51, unknown 35.3
2502 Female, age 75, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 31.0
2464 Female, age 72, unknown 56.8
1831 Male, age 72, unknown 31.0
1840 Male, age 53, unknown 18.7
2850 Male, age 76, both hemispheres 17.6
Periaquaductal grey, lateral
nTPM: 33.3
2272 Male, age 74, both hemispheres 44.2
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 18.2
Pretectal area
nTPM: 42.1
2316 Male, age 76, right hemisphere 75.8
2407 Male, age 75, both hemispheres 67.0
1815 Male, age 53, unknown 55.0
2825 Male, age 18, unknown 42.5
2667 Female, age 75, unknown 41.0
2007 Male, age 72, unknown 39.0
1817 Female, age 42, unknown 38.5
2224 Female, age 72, unknown 32.5
2273 Male, age 74, both hemispheres 29.1
1944 Female, age 72, unknown 22.2
1816 Male, age 51, unknown 21.0
Red nucleus
nTPM: 81.7
2823 Male, age 76, right hemisphere 109.4
1865 Male, age 51, unknown 104.4
2503 Female, age 72, unknown 94.4
2588 Male, age 74, left hemisphere 91.1
1904 Male, age 53, unknown 84.9
2785 Male, age 18, unknown 81.2
1821 Female, age 72, unknown 80.1
2769 Male, age 72, unknown 79.1
2227 Male, age 72, unknown 78.4
2584 Male, age 75, left hemisphere 73.9
2725 Female, age 75, unknown 52.9
1954 Female, age 42, unknown 50.7
Substantia nigra
nTPM: 46.0
2583 Male, age 75, right hemisphere 63.0
2590 Female, age 75, unknown 57.1
2409 Female, age 72, unknown 56.2
2699 Male, age 18, unknown 48.3
1889 Female, age 72, unknown 47.9
1851 Male, age 51, unknown 47.4
2241 Male, age 72, unknown 42.9
1941 Male, age 53, unknown 40.3
2665 Male, age 74, both hemispheres 37.7
1916 Female, age 42, unknown 19.6
Superior colliculus
nTPM: 60.1
1913 Female, age 42, unknown 117.4
1995 Male, age 72, unknown 82.5
2668 Female, age 75, unknown 79.9
1895 Male, age 76, right hemisphere 69.4
1839 Male, age 51, unknown 56.7
2587 Male, age 74, left hemisphere 53.6
2664 Male, age 75, both hemispheres 40.8
1796 Male, age 53, unknown 36.5
2087 Female, age 72, unknown 35.8
2261 Male, age 18, unknown 28.1
Ventral tegmental area
nTPM: 50.7
2223 Female, age 72, unknown 71.3
2410 Female, age 72, unknown 64.9
2021 Male, age 53, unknown 48.1
2218 Male, age 76, both hemispheres 46.6
1942 Male, age 51, unknown 42.8
1915 Female, age 42, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.4
Samples: 183

Max nTPM: 179.8
Min nTPM: 2.6
Std nTPM: 30.1
Median nTPM: 30.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 179.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 179.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 170.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 156.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 122.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 115.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 110.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 105.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 103.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 100.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 85.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.4
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.8
Sample A Female 1.9
Sample B Female 2.9
Sample C Male 1.8
Sample D Male 3.1
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.9
Sample A Female 2.5
Sample B Female 1.6
Sample C Male 0.9
Sample D Male 1.0
Periaqueductal gray
nTPM: 1.4
Samples: 3

Max nTPM: 1.4
Min nTPM: 1.3
Sample B Female 1.3
Sample C Male 1.4
Sample D Male 1.4
Superior colliculi
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.0
Sample A Female 1.5
Sample B Female 1.6
Sample C Male 1.0
Sample D Male 1.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.5
Sample C Female 0.0
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69540561 Antisense, RP_050426_02_A06, Mouse strain C57BL/6J (56 days, male) 0.0

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