A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
133.6
nTPM
Monaco:
272.9
nTPM
Schmiedel:
282.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.6
HPA sample
nTPM
Memory B-cell nTPM: 133.6
Samples: 6
Max nTPM: 159.1
Min nTPM: 81.8
P10809_1017
105.0
P10809_1025
143.9
P10809_1044
81.8
P10809_1063
159.0
P10809_1092
159.1
P10809_1105
152.7
Naive B-cell nTPM: 98.6
Samples: 6
Max nTPM: 139.7
Min nTPM: 69.0
P10809_1011
69.0
P10809_1029
114.9
P10809_1048
139.7
P10809_1067
86.2
P10809_1091
82.8
P10809_1104
99.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
272.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 118.5
Samples: 4
Max nTPM: 159.7
Min nTPM: 80.5
RHH5310_R3677
114.4
RHH5218_R3590
80.5
RHH5247_R3619
159.7
RHH5276_R3648
119.3
Naive B-cell nTPM: 168.9
Samples: 4
Max nTPM: 254.1
Min nTPM: 68.6
RHH5308_R3675
253.5
RHH5216_R3588
68.6
RHH5245_R3617
254.1
RHH5274_R3646
99.4
Non-switched memory B-cell nTPM: 272.9
Samples: 4
Max nTPM: 410.3
Min nTPM: 146.5
RHH5309_R3676
410.3
RHH5217_R3589
175.8
RHH5246_R3618
359.1
RHH5275_R3647
146.5
Plasmablast nTPM: 11.3
Samples: 4
Max nTPM: 16.9
Min nTPM: 2.5
RHH5312_R3679
15.0
RHH5220_R3592
2.5
RHH5249_R3621
16.9
RHH5278_R3650
10.6
Switched memory B-cell nTPM: 218.8
Samples: 4
Max nTPM: 287.2
Min nTPM: 171.5
RHH5311_R3678
231.8
RHH5219_R3591
171.5
RHH5248_R3620
184.8
RHH5277_R3649
287.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
282.1
Schmiedel sample id
TPM
Naive B-cell TPM: 282.1
Samples: 91
Max TPM: 404.6
Min TPM: 129.3
B_CELL_NAIVE_1
404.6
B_CELL_NAIVE_2
396.6
B_CELL_NAIVE_3
386.3
B_CELL_NAIVE_4
368.5
B_CELL_NAIVE_5
365.7
B_CELL_NAIVE_6
363.1
B_CELL_NAIVE_7
354.5
B_CELL_NAIVE_8
353.4
B_CELL_NAIVE_9
350.5
B_CELL_NAIVE_10
349.1
B_CELL_NAIVE_11
349.1
B_CELL_NAIVE_12
346.7
B_CELL_NAIVE_13
343.8
B_CELL_NAIVE_14
343.4
B_CELL_NAIVE_15
342.3
B_CELL_NAIVE_16
340.2
B_CELL_NAIVE_17
334.0
B_CELL_NAIVE_18
329.9
B_CELL_NAIVE_19
328.0
B_CELL_NAIVE_20
325.8
B_CELL_NAIVE_21
325.7
B_CELL_NAIVE_22
325.5
B_CELL_NAIVE_23
323.9
B_CELL_NAIVE_24
323.2
B_CELL_NAIVE_25
321.7
B_CELL_NAIVE_26
320.6
B_CELL_NAIVE_27
320.0
B_CELL_NAIVE_28
318.0
B_CELL_NAIVE_29
317.7
B_CELL_NAIVE_30
315.7
B_CELL_NAIVE_31
313.4
B_CELL_NAIVE_32
312.8
B_CELL_NAIVE_33
310.6
B_CELL_NAIVE_34
309.7
B_CELL_NAIVE_35
308.5
B_CELL_NAIVE_36
307.8
B_CELL_NAIVE_37
307.3
B_CELL_NAIVE_38
307.3
B_CELL_NAIVE_39
302.4
B_CELL_NAIVE_40
296.0
B_CELL_NAIVE_41
295.4
B_CELL_NAIVE_42
294.7
B_CELL_NAIVE_43
294.2
B_CELL_NAIVE_44
292.6
B_CELL_NAIVE_45
292.3
B_CELL_NAIVE_46
291.9
B_CELL_NAIVE_47
291.2
B_CELL_NAIVE_48
288.1
B_CELL_NAIVE_49
287.3
B_CELL_NAIVE_50
285.8
B_CELL_NAIVE_51
283.5
B_CELL_NAIVE_52
282.6
B_CELL_NAIVE_53
277.0
B_CELL_NAIVE_54
274.8
B_CELL_NAIVE_55
274.1
B_CELL_NAIVE_56
270.3
B_CELL_NAIVE_57
263.1
B_CELL_NAIVE_58
262.2
B_CELL_NAIVE_59
261.3
B_CELL_NAIVE_60
261.3
B_CELL_NAIVE_61
261.2
B_CELL_NAIVE_62
259.9
B_CELL_NAIVE_63
258.6
B_CELL_NAIVE_64
258.3
B_CELL_NAIVE_65
258.0
B_CELL_NAIVE_66
257.0
B_CELL_NAIVE_67
255.7
B_CELL_NAIVE_68
250.9
B_CELL_NAIVE_69
247.2
B_CELL_NAIVE_70
247.0
B_CELL_NAIVE_71
242.8
B_CELL_NAIVE_72
237.6
B_CELL_NAIVE_73
231.6
B_CELL_NAIVE_74
230.0
B_CELL_NAIVE_75
229.4
B_CELL_NAIVE_76
224.8
B_CELL_NAIVE_77
222.5
B_CELL_NAIVE_78
213.4
B_CELL_NAIVE_79
212.3
B_CELL_NAIVE_80
210.6
B_CELL_NAIVE_81
206.2
B_CELL_NAIVE_82
188.7
B_CELL_NAIVE_83
185.3
B_CELL_NAIVE_84
183.0
B_CELL_NAIVE_85
178.0
B_CELL_NAIVE_86
165.2
B_CELL_NAIVE_87
164.8
B_CELL_NAIVE_88
163.5
B_CELL_NAIVE_89
155.0
B_CELL_NAIVE_90
154.4
B_CELL_NAIVE_91
129.3
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