ALOX5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • ALOX5
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:133.6 nTPM
Monaco:272.9 nTPM
Schmiedel:282.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

133.6
HPA sample nTPM
Memory B-cell
nTPM: 133.6
Samples: 6

Max nTPM: 159.1
Min nTPM: 81.8
P10809_1017 105.0
P10809_1025 143.9
P10809_1044 81.8
P10809_1063 159.0
P10809_1092 159.1
P10809_1105 152.7
Naive B-cell
nTPM: 98.6
Samples: 6

Max nTPM: 139.7
Min nTPM: 69.0
P10809_1011 69.0
P10809_1029 114.9
P10809_1048 139.7
P10809_1067 86.2
P10809_1091 82.8
P10809_1104 99.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

272.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 118.5
Samples: 4

Max nTPM: 159.7
Min nTPM: 80.5
RHH5310_R3677 114.4
RHH5218_R3590 80.5
RHH5247_R3619 159.7
RHH5276_R3648 119.3
Naive B-cell
nTPM: 168.9
Samples: 4

Max nTPM: 254.1
Min nTPM: 68.6
RHH5308_R3675 253.5
RHH5216_R3588 68.6
RHH5245_R3617 254.1
RHH5274_R3646 99.4
Non-switched memory B-cell
nTPM: 272.9
Samples: 4

Max nTPM: 410.3
Min nTPM: 146.5
RHH5309_R3676 410.3
RHH5217_R3589 175.8
RHH5246_R3618 359.1
RHH5275_R3647 146.5
Plasmablast
nTPM: 11.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 2.5
RHH5312_R3679 15.0
RHH5220_R3592 2.5
RHH5249_R3621 16.9
RHH5278_R3650 10.6
Switched memory B-cell
nTPM: 218.8
Samples: 4

Max nTPM: 287.2
Min nTPM: 171.5
RHH5311_R3678 231.8
RHH5219_R3591 171.5
RHH5248_R3620 184.8
RHH5277_R3649 287.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

282.1
Schmiedel sample id TPM
Naive B-cell
TPM: 282.1
Samples: 91

Max TPM: 404.6
Min TPM: 129.3
B_CELL_NAIVE_1 404.6
B_CELL_NAIVE_2 396.6
B_CELL_NAIVE_3 386.3
B_CELL_NAIVE_4 368.5
B_CELL_NAIVE_5 365.7
B_CELL_NAIVE_6 363.1
B_CELL_NAIVE_7 354.5
B_CELL_NAIVE_8 353.4
B_CELL_NAIVE_9 350.5
B_CELL_NAIVE_10 349.1
B_CELL_NAIVE_11 349.1
B_CELL_NAIVE_12 346.7
B_CELL_NAIVE_13 343.8
B_CELL_NAIVE_14 343.4
B_CELL_NAIVE_15 342.3
B_CELL_NAIVE_16 340.2
B_CELL_NAIVE_17 334.0
B_CELL_NAIVE_18 329.9
B_CELL_NAIVE_19 328.0
B_CELL_NAIVE_20 325.8
B_CELL_NAIVE_21 325.7
B_CELL_NAIVE_22 325.5
B_CELL_NAIVE_23 323.9
B_CELL_NAIVE_24 323.2
B_CELL_NAIVE_25 321.7
B_CELL_NAIVE_26 320.6
B_CELL_NAIVE_27 320.0
B_CELL_NAIVE_28 318.0
B_CELL_NAIVE_29 317.7
B_CELL_NAIVE_30 315.7
B_CELL_NAIVE_31 313.4
B_CELL_NAIVE_32 312.8
B_CELL_NAIVE_33 310.6
B_CELL_NAIVE_34 309.7
B_CELL_NAIVE_35 308.5
B_CELL_NAIVE_36 307.8
B_CELL_NAIVE_37 307.3
B_CELL_NAIVE_38 307.3
B_CELL_NAIVE_39 302.4
B_CELL_NAIVE_40 296.0
B_CELL_NAIVE_41 295.4
B_CELL_NAIVE_42 294.7
B_CELL_NAIVE_43 294.2
B_CELL_NAIVE_44 292.6
B_CELL_NAIVE_45 292.3
B_CELL_NAIVE_46 291.9
B_CELL_NAIVE_47 291.2
B_CELL_NAIVE_48 288.1
B_CELL_NAIVE_49 287.3
B_CELL_NAIVE_50 285.8
B_CELL_NAIVE_51 283.5
B_CELL_NAIVE_52 282.6
B_CELL_NAIVE_53 277.0
B_CELL_NAIVE_54 274.8
B_CELL_NAIVE_55 274.1
B_CELL_NAIVE_56 270.3
B_CELL_NAIVE_57 263.1
B_CELL_NAIVE_58 262.2
B_CELL_NAIVE_59 261.3
B_CELL_NAIVE_60 261.3
B_CELL_NAIVE_61 261.2
B_CELL_NAIVE_62 259.9
B_CELL_NAIVE_63 258.6
B_CELL_NAIVE_64 258.3
B_CELL_NAIVE_65 258.0
B_CELL_NAIVE_66 257.0
B_CELL_NAIVE_67 255.7
B_CELL_NAIVE_68 250.9
B_CELL_NAIVE_69 247.2
B_CELL_NAIVE_70 247.0
B_CELL_NAIVE_71 242.8
B_CELL_NAIVE_72 237.6
B_CELL_NAIVE_73 231.6
B_CELL_NAIVE_74 230.0
B_CELL_NAIVE_75 229.4
B_CELL_NAIVE_76 224.8
B_CELL_NAIVE_77 222.5
B_CELL_NAIVE_78 213.4
B_CELL_NAIVE_79 212.3
B_CELL_NAIVE_80 210.6
B_CELL_NAIVE_81 206.2
B_CELL_NAIVE_82 188.7
B_CELL_NAIVE_83 185.3
B_CELL_NAIVE_84 183.0
B_CELL_NAIVE_85 178.0
B_CELL_NAIVE_86 165.2
B_CELL_NAIVE_87 164.8
B_CELL_NAIVE_88 163.5
B_CELL_NAIVE_89 155.0
B_CELL_NAIVE_90 154.4
B_CELL_NAIVE_91 129.3
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.