A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
225.6
nTPM
Monaco:
373.8
nTPM
Schmiedel:
387.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
225.6
HPA sample
nTPM
Classical monocyte nTPM: 225.7
Samples: 6
Max nTPM: 284.7
Min nTPM: 165.0
P10809_1003
284.7
P10809_1020
209.9
P10809_1039
211.1
P10809_1058
165.0
P10809_1080
274.1
P10809_1107
209.1
Intermediate monocyte nTPM: 198.1
Samples: 6
Max nTPM: 219.7
Min nTPM: 174.7
P10809_1004
183.0
P10809_1023
218.0
P10809_1042
188.2
P10809_1061
219.7
P10809_1081
204.9
P10809_1108
174.7
Non-classical monocyte nTPM: 210.9
Samples: 5
Max nTPM: 380.2
Min nTPM: 149.1
P10809_1005
206.2
P10809_1053
167.2
P10809_1072
380.2
P10809_1082
151.8
P10809_1109
149.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
373.8
Monaco sample
nTPM
Classical monocyte nTPM: 373.8
Samples: 4
Max nTPM: 461.8
Min nTPM: 204.8
RHH5313_R3680
421.1
RHH5221_R3593
407.7
RHH5250_R3622
461.8
RHH5279_R3651
204.8
Intermediate monocyte nTPM: 212.8
Samples: 4
Max nTPM: 299.0
Min nTPM: 127.5
RHH5314_R3681
295.8
RHH5222_R3594
127.5
RHH5251_R3623
299.0
RHH5280_R3652
128.9
Non-classical monocyte nTPM: 295.6
Samples: 4
Max nTPM: 423.7
Min nTPM: 144.2
RHH5315_R3682
226.1
RHH5223_R3595
388.4
RHH5252_R3624
423.7
RHH5281_R3653
144.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
387.2
Schmiedel sample id
TPM
Classical monocyte TPM: 387.2
Samples: 91
Max TPM: 524.5
Min TPM: 247.0
MONOCYTES_1
524.5
MONOCYTES_2
507.1
MONOCYTES_3
502.0
MONOCYTES_4
499.2
MONOCYTES_5
489.4
MONOCYTES_6
487.1
MONOCYTES_7
483.3
MONOCYTES_8
478.5
MONOCYTES_9
474.6
MONOCYTES_10
468.7
MONOCYTES_11
468.0
MONOCYTES_12
464.8
MONOCYTES_13
463.9
MONOCYTES_14
460.5
MONOCYTES_15
459.3
MONOCYTES_16
457.7
MONOCYTES_17
436.7
MONOCYTES_18
433.6
MONOCYTES_19
433.5
MONOCYTES_20
429.1
MONOCYTES_21
427.1
MONOCYTES_22
426.7
MONOCYTES_23
425.6
MONOCYTES_24
422.1
MONOCYTES_25
420.5
MONOCYTES_26
418.5
MONOCYTES_27
418.1
MONOCYTES_28
417.5
MONOCYTES_29
417.0
MONOCYTES_30
414.9
MONOCYTES_31
414.3
MONOCYTES_32
412.6
MONOCYTES_33
410.4
MONOCYTES_34
409.1
MONOCYTES_35
407.1
MONOCYTES_36
406.8
MONOCYTES_37
406.6
MONOCYTES_38
403.8
MONOCYTES_39
402.8
MONOCYTES_40
397.6
MONOCYTES_41
395.3
MONOCYTES_42
395.2
MONOCYTES_43
392.3
MONOCYTES_44
387.9
MONOCYTES_45
387.5
MONOCYTES_46
383.5
MONOCYTES_47
380.7
MONOCYTES_48
380.4
MONOCYTES_49
379.3
MONOCYTES_50
379.0
MONOCYTES_51
378.9
MONOCYTES_52
377.6
MONOCYTES_53
377.0
MONOCYTES_54
374.8
MONOCYTES_55
374.6
MONOCYTES_56
373.4
MONOCYTES_57
373.3
MONOCYTES_58
372.8
MONOCYTES_59
372.7
MONOCYTES_60
372.3
MONOCYTES_61
367.1
MONOCYTES_62
364.6
MONOCYTES_63
364.4
MONOCYTES_64
355.6
MONOCYTES_65
355.5
MONOCYTES_66
350.0
MONOCYTES_67
344.8
MONOCYTES_68
344.7
MONOCYTES_69
342.9
MONOCYTES_70
342.1
MONOCYTES_71
338.9
MONOCYTES_72
337.0
MONOCYTES_73
325.9
MONOCYTES_74
323.8
MONOCYTES_75
323.4
MONOCYTES_76
317.6
MONOCYTES_77
315.4
MONOCYTES_78
315.2
MONOCYTES_79
313.4
MONOCYTES_80
309.6
MONOCYTES_81
304.2
MONOCYTES_82
303.7
MONOCYTES_83
299.6
MONOCYTES_84
299.5
MONOCYTES_85
295.0
MONOCYTES_86
294.8
MONOCYTES_87
294.7
MONOCYTES_88
294.6
MONOCYTES_89
280.8
MONOCYTES_90
262.4
MONOCYTES_91
247.0
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Non-classical monocyte TPM: 348.7
Samples: 90
Max TPM: 560.8
Min TPM: 171.6
M2_1
560.8
M2_2
549.7
M2_3
504.3
M2_4
494.5
M2_5
490.0
M2_6
485.5
M2_7
483.7
M2_8
477.0
M2_9
464.5
M2_10
463.6
M2_11
461.9
M2_12
457.3
M2_13
455.9
M2_14
453.3
M2_15
452.4
M2_16
447.0
M2_17
433.8
M2_18
431.4
M2_19
427.3
M2_20
420.3
M2_21
414.1
M2_22
407.3
M2_23
398.9
M2_24
395.9
M2_25
394.1
M2_26
392.3
M2_27
390.2
M2_28
383.5
M2_29
380.7
M2_30
378.8
M2_31
375.0
M2_32
372.3
M2_33
371.9
M2_34
371.0
M2_35
370.4
M2_36
369.5
M2_37
369.4
M2_38
368.4
M2_39
366.3
M2_40
363.4
M2_41
348.7
M2_42
344.0
M2_43
341.5
M2_44
340.5
M2_45
339.9
M2_46
339.1
M2_47
338.0
M2_48
335.6
M2_49
334.4
M2_50
333.9
M2_51
333.2
M2_52
322.0
M2_53
319.5
M2_54
317.7
M2_55
313.7
M2_56
313.2
M2_57
312.6
M2_58
306.5
M2_59
302.4
M2_60
302.2
M2_61
301.3
M2_62
299.8
M2_63
296.7
M2_64
296.5
M2_65
293.9
M2_66
292.6
M2_67
292.2
M2_68
289.2
M2_69
282.2
M2_70
280.2
M2_71
279.0
M2_72
278.5
M2_73
278.3
M2_74
276.2
M2_75
273.4
M2_76
272.7
M2_77
271.3
M2_78
270.6
M2_79
268.6
M2_80
248.0
M2_81
246.3
M2_82
239.0
M2_83
234.9
M2_84
232.4
M2_85
226.3
M2_86
208.0
M2_87
207.3
M2_88
203.6
M2_89
185.4
M2_90
171.6
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