A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.2
nTPM
Monaco:
217.1
nTPM
Schmiedel:
55.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
HPA sample
nTPM
Memory B-cell nTPM: 14.5
Samples: 6
Max nTPM: 20.9
Min nTPM: 12.1
P10809_1017
20.9
P10809_1025
16.9
P10809_1044
12.6
P10809_1063
12.3
P10809_1092
12.1
P10809_1105
12.5
Naive B-cell nTPM: 17.1
Samples: 6
Max nTPM: 22.4
Min nTPM: 13.6
P10809_1011
14.1
P10809_1029
15.6
P10809_1048
22.4
P10809_1067
18.1
P10809_1091
13.6
P10809_1104
19.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
217.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 113.1
Samples: 4
Max nTPM: 143.3
Min nTPM: 74.2
RHH5310_R3677
143.3
RHH5218_R3590
74.2
RHH5247_R3619
114.2
RHH5276_R3648
120.5
Naive B-cell nTPM: 131.4
Samples: 4
Max nTPM: 163.4
Min nTPM: 116.4
RHH5308_R3675
116.4
RHH5216_R3588
163.4
RHH5245_R3617
120.9
RHH5274_R3646
124.9
Non-switched memory B-cell nTPM: 129.5
Samples: 4
Max nTPM: 135.9
Min nTPM: 124.2
RHH5309_R3676
132.5
RHH5217_R3589
135.9
RHH5246_R3618
124.2
RHH5275_R3647
125.4
Plasmablast nTPM: 217.1
Samples: 4
Max nTPM: 288.3
Min nTPM: 177.6
RHH5312_R3679
288.3
RHH5220_R3592
177.6
RHH5249_R3621
210.8
RHH5278_R3650
191.5
Switched memory B-cell nTPM: 105.0
Samples: 4
Max nTPM: 121.3
Min nTPM: 88.5
RHH5311_R3678
121.3
RHH5219_R3591
106.1
RHH5248_R3620
88.5
RHH5277_R3649
104.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.8
Schmiedel sample id
TPM
Naive B-cell TPM: 55.8
Samples: 91
Max TPM: 80.0
Min TPM: 35.6
B_CELL_NAIVE_1
80.0
B_CELL_NAIVE_2
73.9
B_CELL_NAIVE_3
71.3
B_CELL_NAIVE_4
71.1
B_CELL_NAIVE_5
70.3
B_CELL_NAIVE_6
68.8
B_CELL_NAIVE_7
67.9
B_CELL_NAIVE_8
67.8
B_CELL_NAIVE_9
67.8
B_CELL_NAIVE_10
66.3
B_CELL_NAIVE_11
66.2
B_CELL_NAIVE_12
66.1
B_CELL_NAIVE_13
64.9
B_CELL_NAIVE_14
64.4
B_CELL_NAIVE_15
63.9
B_CELL_NAIVE_16
63.8
B_CELL_NAIVE_17
63.7
B_CELL_NAIVE_18
63.6
B_CELL_NAIVE_19
63.4
B_CELL_NAIVE_20
62.8
B_CELL_NAIVE_21
62.7
B_CELL_NAIVE_22
62.7
B_CELL_NAIVE_23
61.3
B_CELL_NAIVE_24
61.1
B_CELL_NAIVE_25
61.0
B_CELL_NAIVE_26
60.8
B_CELL_NAIVE_27
60.6
B_CELL_NAIVE_28
60.1
B_CELL_NAIVE_29
59.9
B_CELL_NAIVE_30
59.7
B_CELL_NAIVE_31
59.4
B_CELL_NAIVE_32
59.2
B_CELL_NAIVE_33
58.5
B_CELL_NAIVE_34
58.4
B_CELL_NAIVE_35
58.0
B_CELL_NAIVE_36
57.7
B_CELL_NAIVE_37
57.6
B_CELL_NAIVE_38
57.5
B_CELL_NAIVE_39
57.2
B_CELL_NAIVE_40
57.1
B_CELL_NAIVE_41
56.8
B_CELL_NAIVE_42
56.7
B_CELL_NAIVE_43
56.7
B_CELL_NAIVE_44
56.2
B_CELL_NAIVE_45
56.2
B_CELL_NAIVE_46
56.1
B_CELL_NAIVE_47
55.6
B_CELL_NAIVE_48
55.3
B_CELL_NAIVE_49
54.8
B_CELL_NAIVE_50
54.8
B_CELL_NAIVE_51
54.4
B_CELL_NAIVE_52
54.1
B_CELL_NAIVE_53
54.1
B_CELL_NAIVE_54
53.7
B_CELL_NAIVE_55
53.5
B_CELL_NAIVE_56
53.5
B_CELL_NAIVE_57
53.3
B_CELL_NAIVE_58
53.2
B_CELL_NAIVE_59
52.5
B_CELL_NAIVE_60
52.4
B_CELL_NAIVE_61
52.3
B_CELL_NAIVE_62
52.2
B_CELL_NAIVE_63
52.0
B_CELL_NAIVE_64
51.4
B_CELL_NAIVE_65
51.4
B_CELL_NAIVE_66
51.0
B_CELL_NAIVE_67
50.6
B_CELL_NAIVE_68
50.4
B_CELL_NAIVE_69
50.1
B_CELL_NAIVE_70
50.0
B_CELL_NAIVE_71
49.9
B_CELL_NAIVE_72
49.8
B_CELL_NAIVE_73
49.7
B_CELL_NAIVE_74
49.5
B_CELL_NAIVE_75
48.7
B_CELL_NAIVE_76
48.3
B_CELL_NAIVE_77
48.3
B_CELL_NAIVE_78
47.2
B_CELL_NAIVE_79
45.9
B_CELL_NAIVE_80
45.7
B_CELL_NAIVE_81
45.3
B_CELL_NAIVE_82
44.9
B_CELL_NAIVE_83
43.7
B_CELL_NAIVE_84
43.4
B_CELL_NAIVE_85
43.1
B_CELL_NAIVE_86
42.0
B_CELL_NAIVE_87
41.4
B_CELL_NAIVE_88
37.4
B_CELL_NAIVE_89
36.9
B_CELL_NAIVE_90
36.1
B_CELL_NAIVE_91
35.6
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