A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.9
nTPM
Monaco:
156.4
nTPM
Schmiedel:
49.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.9
HPA sample
nTPM
Classical monocyte nTPM: 19.7
Samples: 6
Max nTPM: 24.9
Min nTPM: 16.8
P10809_1003
22.8
P10809_1020
24.9
P10809_1039
17.1
P10809_1058
16.8
P10809_1080
17.0
P10809_1107
19.4
Intermediate monocyte nTPM: 22.5
Samples: 6
Max nTPM: 26.5
Min nTPM: 17.6
P10809_1004
26.5
P10809_1023
17.6
P10809_1042
25.4
P10809_1061
25.6
P10809_1081
19.0
P10809_1108
20.7
Non-classical monocyte nTPM: 23.9
Samples: 5
Max nTPM: 41.1
Min nTPM: 12.4
P10809_1005
23.2
P10809_1053
25.5
P10809_1072
41.1
P10809_1082
12.4
P10809_1109
17.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.4
Monaco sample
nTPM
Classical monocyte nTPM: 156.4
Samples: 4
Max nTPM: 198.1
Min nTPM: 113.1
RHH5313_R3680
184.4
RHH5221_R3593
198.1
RHH5250_R3622
130.1
RHH5279_R3651
113.1
Intermediate monocyte nTPM: 143.8
Samples: 4
Max nTPM: 188.7
Min nTPM: 120.8
RHH5314_R3681
120.8
RHH5222_R3594
188.7
RHH5251_R3623
140.1
RHH5280_R3652
125.5
Non-classical monocyte nTPM: 145.5
Samples: 4
Max nTPM: 210.3
Min nTPM: 120.4
RHH5315_R3682
125.5
RHH5223_R3595
210.3
RHH5252_R3624
125.7
RHH5281_R3653
120.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.7
Schmiedel sample id
TPM
Classical monocyte TPM: 49.7
Samples: 91
Max TPM: 61.6
Min TPM: 36.2
MONOCYTES_1
61.6
MONOCYTES_2
61.5
MONOCYTES_3
60.6
MONOCYTES_4
58.5
MONOCYTES_5
58.1
MONOCYTES_6
57.7
MONOCYTES_7
57.3
MONOCYTES_8
57.0
MONOCYTES_9
56.9
MONOCYTES_10
56.8
MONOCYTES_11
56.3
MONOCYTES_12
55.6
MONOCYTES_13
55.4
MONOCYTES_14
55.4
MONOCYTES_15
55.3
MONOCYTES_16
54.7
MONOCYTES_17
54.5
MONOCYTES_18
54.5
MONOCYTES_19
54.4
MONOCYTES_20
54.3
MONOCYTES_21
53.8
MONOCYTES_22
53.7
MONOCYTES_23
53.7
MONOCYTES_24
53.6
MONOCYTES_25
53.5
MONOCYTES_26
53.5
MONOCYTES_27
53.1
MONOCYTES_28
53.0
MONOCYTES_29
52.7
MONOCYTES_30
52.6
MONOCYTES_31
52.6
MONOCYTES_32
52.4
MONOCYTES_33
52.4
MONOCYTES_34
52.3
MONOCYTES_35
52.3
MONOCYTES_36
52.0
MONOCYTES_37
51.5
MONOCYTES_38
51.3
MONOCYTES_39
51.2
MONOCYTES_40
51.0
MONOCYTES_41
50.5
MONOCYTES_42
50.3
MONOCYTES_43
50.2
MONOCYTES_44
49.8
MONOCYTES_45
49.8
MONOCYTES_46
49.5
MONOCYTES_47
49.5
MONOCYTES_48
49.4
MONOCYTES_49
49.4
MONOCYTES_50
49.2
MONOCYTES_51
48.5
MONOCYTES_52
48.4
MONOCYTES_53
48.3
MONOCYTES_54
48.1
MONOCYTES_55
47.9
MONOCYTES_56
47.8
MONOCYTES_57
47.8
MONOCYTES_58
47.5
MONOCYTES_59
47.5
MONOCYTES_60
47.4
MONOCYTES_61
47.1
MONOCYTES_62
46.9
MONOCYTES_63
46.9
MONOCYTES_64
46.9
MONOCYTES_65
45.8
MONOCYTES_66
45.7
MONOCYTES_67
45.7
MONOCYTES_68
45.6
MONOCYTES_69
45.5
MONOCYTES_70
45.0
MONOCYTES_71
45.0
MONOCYTES_72
44.9
MONOCYTES_73
44.9
MONOCYTES_74
44.7
MONOCYTES_75
44.7
MONOCYTES_76
44.7
MONOCYTES_77
44.4
MONOCYTES_78
44.4
MONOCYTES_79
44.0
MONOCYTES_80
43.9
MONOCYTES_81
43.8
MONOCYTES_82
43.7
MONOCYTES_83
42.7
MONOCYTES_84
42.1
MONOCYTES_85
41.8
MONOCYTES_86
41.4
MONOCYTES_87
40.6
MONOCYTES_88
39.0
MONOCYTES_89
38.9
MONOCYTES_90
37.5
MONOCYTES_91
36.2
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Non-classical monocyte TPM: 43.6
Samples: 90
Max TPM: 55.5
Min TPM: 29.8
M2_1
55.5
M2_2
53.6
M2_3
53.4
M2_4
53.0
M2_5
51.5
M2_6
51.4
M2_7
51.3
M2_8
50.7
M2_9
50.1
M2_10
49.7
M2_11
49.4
M2_12
49.2
M2_13
48.8
M2_14
48.7
M2_15
48.6
M2_16
48.4
M2_17
48.3
M2_18
48.1
M2_19
48.0
M2_20
48.0
M2_21
48.0
M2_22
47.3
M2_23
47.1
M2_24
47.0
M2_25
47.0
M2_26
46.9
M2_27
46.8
M2_28
46.7
M2_29
46.4
M2_30
46.3
M2_31
46.3
M2_32
46.2
M2_33
46.0
M2_34
46.0
M2_35
45.7
M2_36
45.5
M2_37
45.2
M2_38
45.0
M2_39
44.9
M2_40
44.9
M2_41
44.7
M2_42
44.5
M2_43
44.2
M2_44
43.9
M2_45
43.7
M2_46
43.7
M2_47
43.7
M2_48
43.6
M2_49
43.6
M2_50
43.4
M2_51
43.2
M2_52
43.2
M2_53
43.1
M2_54
42.9
M2_55
42.8
M2_56
42.8
M2_57
42.6
M2_58
42.5
M2_59
42.0
M2_60
41.8
M2_61
41.5
M2_62
41.0
M2_63
40.9
M2_64
40.6
M2_65
40.4
M2_66
40.0
M2_67
40.0
M2_68
39.9
M2_69
39.8
M2_70
39.3
M2_71
39.3
M2_72
39.1
M2_73
39.0
M2_74
38.9
M2_75
38.8
M2_76
38.6
M2_77
38.2
M2_78
38.1
M2_79
37.7
M2_80
37.7
M2_81
37.3
M2_82
36.6
M2_83
35.9
M2_84
35.2
M2_85
34.9
M2_86
34.0
M2_87
32.2
M2_88
31.2
M2_89
30.4
M2_90
29.8
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