A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.5
nTPM
Monaco:
79.9
nTPM
Schmiedel:
29.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
HPA sample
nTPM
Memory B-cell nTPM: 26.5
Samples: 6
Max nTPM: 35.8
Min nTPM: 22.8
P10809_1017
23.4
P10809_1025
35.8
P10809_1044
23.5
P10809_1063
22.8
P10809_1092
25.2
P10809_1105
28.5
Naive B-cell nTPM: 20.6
Samples: 6
Max nTPM: 39.9
Min nTPM: 13.1
P10809_1011
13.1
P10809_1029
17.4
P10809_1048
39.9
P10809_1067
14.4
P10809_1091
19.7
P10809_1104
18.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 79.9
Samples: 4
Max nTPM: 98.5
Min nTPM: 57.8
RHH5310_R3677
79.9
RHH5218_R3590
57.8
RHH5247_R3619
83.6
RHH5276_R3648
98.5
Naive B-cell nTPM: 43.6
Samples: 4
Max nTPM: 47.3
Min nTPM: 37.7
RHH5308_R3675
45.2
RHH5216_R3588
47.3
RHH5245_R3617
37.7
RHH5274_R3646
44.0
Non-switched memory B-cell nTPM: 49.0
Samples: 4
Max nTPM: 54.8
Min nTPM: 40.8
RHH5309_R3676
54.8
RHH5217_R3589
45.6
RHH5246_R3618
40.8
RHH5275_R3647
54.8
Plasmablast nTPM: 57.8
Samples: 4
Max nTPM: 72.9
Min nTPM: 49.5
RHH5312_R3679
49.5
RHH5220_R3592
57.3
RHH5249_R3621
72.9
RHH5278_R3650
51.7
Switched memory B-cell nTPM: 75.9
Samples: 4
Max nTPM: 95.4
Min nTPM: 61.3
RHH5311_R3678
95.4
RHH5219_R3591
61.3
RHH5248_R3620
69.2
RHH5277_R3649
77.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.4
Schmiedel sample id
TPM
Naive B-cell TPM: 29.4
Samples: 91
Max TPM: 41.4
Min TPM: 22.2
B_CELL_NAIVE_1
41.4
B_CELL_NAIVE_2
40.8
B_CELL_NAIVE_3
39.1
B_CELL_NAIVE_4
38.3
B_CELL_NAIVE_5
37.6
B_CELL_NAIVE_6
37.0
B_CELL_NAIVE_7
36.9
B_CELL_NAIVE_8
36.8
B_CELL_NAIVE_9
36.2
B_CELL_NAIVE_10
36.0
B_CELL_NAIVE_11
36.0
B_CELL_NAIVE_12
35.8
B_CELL_NAIVE_13
35.7
B_CELL_NAIVE_14
35.2
B_CELL_NAIVE_15
34.0
B_CELL_NAIVE_16
33.8
B_CELL_NAIVE_17
33.8
B_CELL_NAIVE_18
33.7
B_CELL_NAIVE_19
33.3
B_CELL_NAIVE_20
33.2
B_CELL_NAIVE_21
33.2
B_CELL_NAIVE_22
32.8
B_CELL_NAIVE_23
32.7
B_CELL_NAIVE_24
32.7
B_CELL_NAIVE_25
32.7
B_CELL_NAIVE_26
32.6
B_CELL_NAIVE_27
32.1
B_CELL_NAIVE_28
31.8
B_CELL_NAIVE_29
31.8
B_CELL_NAIVE_30
31.1
B_CELL_NAIVE_31
30.8
B_CELL_NAIVE_32
30.5
B_CELL_NAIVE_33
30.5
B_CELL_NAIVE_34
30.0
B_CELL_NAIVE_35
29.6
B_CELL_NAIVE_36
29.5
B_CELL_NAIVE_37
29.4
B_CELL_NAIVE_38
29.4
B_CELL_NAIVE_39
29.4
B_CELL_NAIVE_40
29.3
B_CELL_NAIVE_41
29.2
B_CELL_NAIVE_42
29.1
B_CELL_NAIVE_43
29.0
B_CELL_NAIVE_44
28.6
B_CELL_NAIVE_45
28.6
B_CELL_NAIVE_46
28.6
B_CELL_NAIVE_47
28.3
B_CELL_NAIVE_48
28.2
B_CELL_NAIVE_49
28.0
B_CELL_NAIVE_50
28.0
B_CELL_NAIVE_51
27.7
B_CELL_NAIVE_52
27.5
B_CELL_NAIVE_53
27.5
B_CELL_NAIVE_54
27.2
B_CELL_NAIVE_55
27.1
B_CELL_NAIVE_56
27.0
B_CELL_NAIVE_57
27.0
B_CELL_NAIVE_58
26.9
B_CELL_NAIVE_59
26.9
B_CELL_NAIVE_60
26.6
B_CELL_NAIVE_61
26.5
B_CELL_NAIVE_62
26.4
B_CELL_NAIVE_63
26.3
B_CELL_NAIVE_64
26.3
B_CELL_NAIVE_65
26.3
B_CELL_NAIVE_66
26.3
B_CELL_NAIVE_67
26.2
B_CELL_NAIVE_68
26.1
B_CELL_NAIVE_69
26.0
B_CELL_NAIVE_70
25.7
B_CELL_NAIVE_71
25.7
B_CELL_NAIVE_72
25.7
B_CELL_NAIVE_73
25.6
B_CELL_NAIVE_74
25.5
B_CELL_NAIVE_75
25.2
B_CELL_NAIVE_76
25.2
B_CELL_NAIVE_77
24.9
B_CELL_NAIVE_78
24.8
B_CELL_NAIVE_79
24.6
B_CELL_NAIVE_80
24.5
B_CELL_NAIVE_81
24.5
B_CELL_NAIVE_82
24.4
B_CELL_NAIVE_83
23.8
B_CELL_NAIVE_84
23.3
B_CELL_NAIVE_85
23.2
B_CELL_NAIVE_86
23.1
B_CELL_NAIVE_87
22.6
B_CELL_NAIVE_88
22.6
B_CELL_NAIVE_89
22.5
B_CELL_NAIVE_90
22.3
B_CELL_NAIVE_91
22.2
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