A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.2
nTPM
Monaco:
61.1
nTPM
Schmiedel:
50.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
HPA sample
nTPM
NK-cell nTPM: 18.2
Samples: 6
Max nTPM: 26.3
Min nTPM: 12.5
P10809_1013
12.5
P10809_1033
14.1
P10809_1052
26.3
P10809_1071
15.2
P10809_1093
19.9
P10809_1103
20.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.1
Monaco sample
nTPM
NK-cell nTPM: 61.1
Samples: 4
Max nTPM: 71.6
Min nTPM: 53.7
RHH5316_R3683
56.3
RHH5224_R3596
71.6
RHH5253_R3625
53.7
RHH5282_R3654
62.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.8
Schmiedel sample id
TPM
NK-cell TPM: 50.8
Samples: 90
Max TPM: 64.0
Min TPM: 35.7
NK_1
64.0
NK_2
63.2
NK_3
62.0
NK_4
61.7
NK_5
61.5
NK_6
59.9
NK_7
59.8
NK_8
59.4
NK_9
59.0
NK_10
58.6
NK_11
58.6
NK_12
58.6
NK_13
58.4
NK_14
58.0
NK_15
56.8
NK_16
56.8
NK_17
56.7
NK_18
56.5
NK_19
56.4
NK_20
56.3
NK_21
56.0
NK_22
55.9
NK_23
55.5
NK_24
55.2
NK_25
55.2
NK_26
55.2
NK_27
54.8
NK_28
54.5
NK_29
54.3
NK_30
53.9
NK_31
53.8
NK_32
53.7
NK_33
53.4
NK_34
53.4
NK_35
53.1
NK_36
53.0
NK_37
52.9
NK_38
52.7
NK_39
52.6
NK_40
52.6
NK_41
52.5
NK_42
52.4
NK_43
51.6
NK_44
51.5
NK_45
51.4
NK_46
51.3
NK_47
50.4
NK_48
50.3
NK_49
50.1
NK_50
50.0
NK_51
49.3
NK_52
49.1
NK_53
48.9
NK_54
48.9
NK_55
48.9
NK_56
48.8
NK_57
48.7
NK_58
48.0
NK_59
48.0
NK_60
47.9
NK_61
47.7
NK_62
47.3
NK_63
47.3
NK_64
47.2
NK_65
47.0
NK_66
46.7
NK_67
46.7
NK_68
46.2
NK_69
45.8
NK_70
45.3
NK_71
45.2
NK_72
44.8
NK_73
44.4
NK_74
44.3
NK_75
44.1
NK_76
43.7
NK_77
43.6
NK_78
43.1
NK_79
43.0
NK_80
42.9
NK_81
42.7
NK_82
42.6
NK_83
42.6
NK_84
42.5
NK_85
40.6
NK_86
40.4
NK_87
39.4
NK_88
39.2
NK_89
38.3
NK_90
35.7
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