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  • CLK1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:65.1 nTPM
HPA Brain:31.2 nTPM
GTEx:65.1 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Pig:82.3 nTPM
Mouse:17.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.2
Sample id Sample description nTPM
Amygdala
nTPM: 31.2
2514 Male, age 75, right hemisphere 34.8
2695 Female, age 67, right hemisphere 34.6
1987 Female, age 91, left hemisphere 33.9
2814 Male, age 76, right hemisphere 27.1
2517 Female, age 94, left hemisphere 25.4
Basal amygdala
nTPM: 24.8
2609 Male, age 75, right hemisphere 29.1
2827 Female, age 67, right hemisphere 27.6
2110 Male, age 80, left hemisphere 27.0
2243 Female, age 91, right hemisphere 23.1
2685 Female, age 94, left hemisphere 21.0
1955 Male, age 76, both hemispheres 20.9
Central amygdala
nTPM: 23.5
2515 Male, age 75, right hemisphere 27.2
2701 Female, age 91, right hemisphere 26.3
2239 Male, age 80, left hemisphere 24.3
2826 Female, age 94, left hemisphere 20.9
1905 Male, age 76, both hemispheres 18.6
Corticomedial amygdala
nTPM: 23.1
2428 Male, age 75, right hemisphere 24.8
2429 Female, age 94, left hemisphere 24.8
2240 Male, age 76, both hemispheres 24.3
2535 Female, age 67, right hemisphere 24.2
2829 Male, age 80, left hemisphere 20.4
2242 Female, age 91, right hemisphere 20.2
Lateral amygdala
nTPM: 24.5
2830 Female, age 67, right hemisphere 29.0
2516 Male, age 75, right hemisphere 27.6
2255 Female, age 91, right hemisphere 25.9
2256 Male, age 80, left hemisphere 23.1
2534 Female, age 94, left hemisphere 22.4
1883 Male, age 76, both hemispheres 19.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 65.1
Samples: 181

Max nTPM: 159.5
Min nTPM: 10.9
Std nTPM: 27.5
Median nTPM: 61.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 159.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 153.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 144.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 134.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 125.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 125.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 122.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 119.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 118.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 112.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 112.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 111.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 109.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 107.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 107.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 105.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 105.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 101.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 96.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 95.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 94.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 94.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 94.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 93.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 90.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 89.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 89.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 89.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 88.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 87.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 87.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 87.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 86.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 86.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 83.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 82.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 82.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 81.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 81.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 78.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 78.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 76.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 75.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 74.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 74.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 73.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 72.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 72.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 71.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 71.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 70.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 70.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 70.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 69.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 69.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 69.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 69.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 68.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 68.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 68.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 67.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 67.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 65.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 65.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 65.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 64.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 64.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 64.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 64.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 64.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 63.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 61.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 61.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 61.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 60.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 60.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 58.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 56.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 56.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 56.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 56.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 55.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 55.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 55.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 53.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 52.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 52.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 51.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 50.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 49.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 49.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 48.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 48.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 47.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 47.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 47.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 47.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 47.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 46.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 46.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 46.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 46.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 46.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 46.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 46.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 46.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 46.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 45.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 44.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 43.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 43.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 42.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 42.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 41.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 40.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 39.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 39.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 39.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 39.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 38.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 38.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 38.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 37.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 37.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 36.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 34.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 32.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 32.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 32.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 27.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 26.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 26.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 26.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 25.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 24.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 24.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 16.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 11.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 10.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 176.7
FF:10151-102I7 76 years, female 176.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.3
Pig sample Sample description nTPM
Amygdala
nTPM: 82.3
Samples: 4

Max nTPM: 92.4
Min nTPM: 67.1
Sample A Female 67.1
Sample B Female 92.4
Sample C Male 88.6
Sample D Male 81.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 10.5
Sample A Male 17.1
Sample B Male 26.3
Sample C Female 10.5
Sample D Female 14.3

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