A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.2
nTPM
Monaco:
209.1
nTPM
Schmiedel:
1029.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
HPA sample
nTPM
Memory B-cell nTPM: 13.2
Samples: 6
Max nTPM: 17.8
Min nTPM: 9.1
P10809_1017
13.8
P10809_1025
13.2
P10809_1044
17.8
P10809_1063
9.1
P10809_1092
11.5
P10809_1105
13.5
Naive B-cell nTPM: 8.5
Samples: 6
Max nTPM: 11.7
Min nTPM: 4.2
P10809_1011
5.8
P10809_1029
11.1
P10809_1048
4.2
P10809_1067
11.7
P10809_1091
7.1
P10809_1104
11.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
209.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 182.6
Samples: 4
Max nTPM: 243.8
Min nTPM: 144.7
RHH5310_R3677
193.1
RHH5218_R3590
144.7
RHH5247_R3619
243.8
RHH5276_R3648
148.7
Naive B-cell nTPM: 209.1
Samples: 4
Max nTPM: 224.6
Min nTPM: 182.4
RHH5308_R3675
218.2
RHH5216_R3588
211.1
RHH5245_R3617
224.6
RHH5274_R3646
182.4
Non-switched memory B-cell nTPM: 184.5
Samples: 4
Max nTPM: 225.8
Min nTPM: 114.6
RHH5309_R3676
185.5
RHH5217_R3589
225.8
RHH5246_R3618
211.9
RHH5275_R3647
114.6
Plasmablast nTPM: 143.3
Samples: 4
Max nTPM: 168.4
Min nTPM: 125.6
RHH5312_R3679
168.4
RHH5220_R3592
125.6
RHH5249_R3621
132.0
RHH5278_R3650
147.3
Switched memory B-cell nTPM: 184.2
Samples: 4
Max nTPM: 224.0
Min nTPM: 118.9
RHH5311_R3678
200.5
RHH5219_R3591
224.0
RHH5248_R3620
193.4
RHH5277_R3649
118.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1029.0
Schmiedel sample id
TPM
Naive B-cell TPM: 1029.0
Samples: 91
Max TPM: 1742.9
Min TPM: 606.8
B_CELL_NAIVE_1
1742.9
B_CELL_NAIVE_2
1662.4
B_CELL_NAIVE_3
1609.3
B_CELL_NAIVE_4
1566.0
B_CELL_NAIVE_5
1528.2
B_CELL_NAIVE_6
1524.3
B_CELL_NAIVE_7
1384.3
B_CELL_NAIVE_8
1333.1
B_CELL_NAIVE_9
1321.0
B_CELL_NAIVE_10
1266.2
B_CELL_NAIVE_11
1264.1
B_CELL_NAIVE_12
1260.1
B_CELL_NAIVE_13
1250.9
B_CELL_NAIVE_14
1235.6
B_CELL_NAIVE_15
1218.0
B_CELL_NAIVE_16
1206.1
B_CELL_NAIVE_17
1194.9
B_CELL_NAIVE_18
1193.5
B_CELL_NAIVE_19
1175.0
B_CELL_NAIVE_20
1174.9
B_CELL_NAIVE_21
1168.5
B_CELL_NAIVE_22
1153.0
B_CELL_NAIVE_23
1105.7
B_CELL_NAIVE_24
1101.8
B_CELL_NAIVE_25
1098.6
B_CELL_NAIVE_26
1093.6
B_CELL_NAIVE_27
1086.0
B_CELL_NAIVE_28
1084.0
B_CELL_NAIVE_29
1069.4
B_CELL_NAIVE_30
1065.5
B_CELL_NAIVE_31
1062.4
B_CELL_NAIVE_32
1061.6
B_CELL_NAIVE_33
1061.5
B_CELL_NAIVE_34
1056.9
B_CELL_NAIVE_35
1055.0
B_CELL_NAIVE_36
1052.8
B_CELL_NAIVE_37
1043.8
B_CELL_NAIVE_38
1043.2
B_CELL_NAIVE_39
1039.7
B_CELL_NAIVE_40
1028.8
B_CELL_NAIVE_41
1023.0
B_CELL_NAIVE_42
1017.8
B_CELL_NAIVE_43
1016.9
B_CELL_NAIVE_44
1012.6
B_CELL_NAIVE_45
1007.3
B_CELL_NAIVE_46
999.1
B_CELL_NAIVE_47
998.2
B_CELL_NAIVE_48
993.9
B_CELL_NAIVE_49
991.2
B_CELL_NAIVE_50
973.8
B_CELL_NAIVE_51
972.6
B_CELL_NAIVE_52
969.3
B_CELL_NAIVE_53
966.6
B_CELL_NAIVE_54
964.1
B_CELL_NAIVE_55
954.5
B_CELL_NAIVE_56
947.7
B_CELL_NAIVE_57
927.7
B_CELL_NAIVE_58
917.5
B_CELL_NAIVE_59
914.0
B_CELL_NAIVE_60
912.2
B_CELL_NAIVE_61
903.0
B_CELL_NAIVE_62
899.1
B_CELL_NAIVE_63
898.8
B_CELL_NAIVE_64
898.6
B_CELL_NAIVE_65
883.7
B_CELL_NAIVE_66
878.4
B_CELL_NAIVE_67
871.1
B_CELL_NAIVE_68
870.7
B_CELL_NAIVE_69
868.3
B_CELL_NAIVE_70
865.8
B_CELL_NAIVE_71
864.8
B_CELL_NAIVE_72
864.1
B_CELL_NAIVE_73
845.4
B_CELL_NAIVE_74
843.6
B_CELL_NAIVE_75
841.7
B_CELL_NAIVE_76
838.3
B_CELL_NAIVE_77
834.9
B_CELL_NAIVE_78
831.0
B_CELL_NAIVE_79
829.7
B_CELL_NAIVE_80
829.6
B_CELL_NAIVE_81
828.0
B_CELL_NAIVE_82
818.4
B_CELL_NAIVE_83
810.4
B_CELL_NAIVE_84
796.4
B_CELL_NAIVE_85
768.3
B_CELL_NAIVE_86
763.2
B_CELL_NAIVE_87
762.0
B_CELL_NAIVE_88
745.3
B_CELL_NAIVE_89
705.8
B_CELL_NAIVE_90
648.5
B_CELL_NAIVE_91
606.8
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