A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
188.4
nTPM
Schmiedel:
445.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 5.1
Samples: 6
Max nTPM: 8.7
Min nTPM: 3.0
P10809_1003
5.7
P10809_1020
8.7
P10809_1039
5.7
P10809_1058
3.0
P10809_1080
3.8
P10809_1107
3.8
Intermediate monocyte nTPM: 3.4
Samples: 6
Max nTPM: 5.0
Min nTPM: 1.8
P10809_1004
4.0
P10809_1023
1.8
P10809_1042
2.2
P10809_1061
4.6
P10809_1081
5.0
P10809_1108
2.7
Non-classical monocyte nTPM: 5.1
Samples: 5
Max nTPM: 9.8
Min nTPM: 2.4
P10809_1005
4.8
P10809_1053
2.4
P10809_1072
9.8
P10809_1082
4.3
P10809_1109
4.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
188.4
Monaco sample
nTPM
Classical monocyte nTPM: 147.2
Samples: 4
Max nTPM: 197.2
Min nTPM: 105.8
RHH5313_R3680
144.2
RHH5221_R3593
141.5
RHH5250_R3622
197.2
RHH5279_R3651
105.8
Intermediate monocyte nTPM: 188.4
Samples: 4
Max nTPM: 268.8
Min nTPM: 139.3
RHH5314_R3681
147.8
RHH5222_R3594
197.8
RHH5251_R3623
268.8
RHH5280_R3652
139.3
Non-classical monocyte nTPM: 166.7
Samples: 4
Max nTPM: 235.3
Min nTPM: 102.3
RHH5315_R3682
102.3
RHH5223_R3595
202.6
RHH5252_R3624
235.3
RHH5281_R3653
126.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
445.7
Schmiedel sample id
TPM
Classical monocyte TPM: 367.5
Samples: 91
Max TPM: 560.9
Min TPM: 258.3
MONOCYTES_1
560.9
MONOCYTES_2
504.2
MONOCYTES_3
472.7
MONOCYTES_4
472.2
MONOCYTES_5
466.6
MONOCYTES_6
464.3
MONOCYTES_7
450.4
MONOCYTES_8
450.2
MONOCYTES_9
445.7
MONOCYTES_10
444.2
MONOCYTES_11
443.6
MONOCYTES_12
442.4
MONOCYTES_13
437.4
MONOCYTES_14
431.2
MONOCYTES_15
424.2
MONOCYTES_16
417.5
MONOCYTES_17
415.4
MONOCYTES_18
414.8
MONOCYTES_19
414.1
MONOCYTES_20
411.5
MONOCYTES_21
407.0
MONOCYTES_22
404.0
MONOCYTES_23
400.9
MONOCYTES_24
400.6
MONOCYTES_25
400.5
MONOCYTES_26
399.7
MONOCYTES_27
397.4
MONOCYTES_28
396.6
MONOCYTES_29
390.9
MONOCYTES_30
388.6
MONOCYTES_31
388.1
MONOCYTES_32
386.3
MONOCYTES_33
383.1
MONOCYTES_34
378.1
MONOCYTES_35
378.1
MONOCYTES_36
376.5
MONOCYTES_37
375.1
MONOCYTES_38
373.1
MONOCYTES_39
371.8
MONOCYTES_40
367.8
MONOCYTES_41
366.2
MONOCYTES_42
365.7
MONOCYTES_43
358.7
MONOCYTES_44
358.5
MONOCYTES_45
355.4
MONOCYTES_46
355.3
MONOCYTES_47
355.1
MONOCYTES_48
354.8
MONOCYTES_49
354.7
MONOCYTES_50
353.3
MONOCYTES_51
351.6
MONOCYTES_52
351.5
MONOCYTES_53
351.5
MONOCYTES_54
351.2
MONOCYTES_55
349.7
MONOCYTES_56
347.2
MONOCYTES_57
345.8
MONOCYTES_58
345.3
MONOCYTES_59
345.3
MONOCYTES_60
343.5
MONOCYTES_61
341.4
MONOCYTES_62
338.4
MONOCYTES_63
333.6
MONOCYTES_64
329.9
MONOCYTES_65
328.9
MONOCYTES_66
328.7
MONOCYTES_67
328.3
MONOCYTES_68
327.8
MONOCYTES_69
327.5
MONOCYTES_70
326.6
MONOCYTES_71
325.8
MONOCYTES_72
322.9
MONOCYTES_73
321.8
MONOCYTES_74
319.6
MONOCYTES_75
317.4
MONOCYTES_76
317.3
MONOCYTES_77
316.5
MONOCYTES_78
316.0
MONOCYTES_79
311.1
MONOCYTES_80
310.3
MONOCYTES_81
309.5
MONOCYTES_82
308.4
MONOCYTES_83
306.7
MONOCYTES_84
306.5
MONOCYTES_85
300.1
MONOCYTES_86
284.5
MONOCYTES_87
284.5
MONOCYTES_88
265.5
MONOCYTES_89
260.2
MONOCYTES_90
259.0
MONOCYTES_91
258.3
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Non-classical monocyte TPM: 445.7
Samples: 90
Max TPM: 695.3
Min TPM: 218.1
M2_1
695.3
M2_2
665.1
M2_3
630.5
M2_4
623.7
M2_5
619.4
M2_6
613.6
M2_7
612.1
M2_8
608.3
M2_9
593.8
M2_10
583.8
M2_11
568.4
M2_12
567.7
M2_13
567.2
M2_14
566.4
M2_15
562.6
M2_16
554.8
M2_17
550.1
M2_18
527.4
M2_19
522.8
M2_20
521.2
M2_21
520.8
M2_22
509.7
M2_23
506.8
M2_24
506.6
M2_25
505.1
M2_26
496.9
M2_27
487.7
M2_28
485.2
M2_29
482.0
M2_30
472.6
M2_31
468.2
M2_32
465.7
M2_33
464.4
M2_34
458.9
M2_35
456.6
M2_36
451.9
M2_37
450.0
M2_38
447.9
M2_39
446.8
M2_40
443.8
M2_41
442.8
M2_42
442.2
M2_43
441.7
M2_44
441.1
M2_45
440.8
M2_46
436.3
M2_47
432.3
M2_48
429.2
M2_49
428.2
M2_50
427.4
M2_51
413.7
M2_52
413.0
M2_53
412.5
M2_54
412.1
M2_55
408.5
M2_56
407.3
M2_57
404.4
M2_58
399.7
M2_59
398.6
M2_60
397.9
M2_61
396.5
M2_62
395.4
M2_63
386.1
M2_64
385.3
M2_65
384.9
M2_66
383.4
M2_67
383.1
M2_68
376.2
M2_69
367.2
M2_70
367.0
M2_71
365.2
M2_72
360.2
M2_73
353.2
M2_74
352.0
M2_75
350.8
M2_76
349.6
M2_77
349.1
M2_78
344.8
M2_79
341.5
M2_80
337.8
M2_81
329.7
M2_82
329.5
M2_83
325.2
M2_84
319.0
M2_85
317.7
M2_86
317.5
M2_87
306.7
M2_88
304.7
M2_89
299.9
M2_90
218.1
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