A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.7
nTPM
Monaco:
113.8
nTPM
Schmiedel:
24.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.7
HPA sample
nTPM
Classical monocyte nTPM: 12.1
Samples: 6
Max nTPM: 18.6
Min nTPM: 8.1
P10809_1003
18.6
P10809_1020
8.6
P10809_1039
8.1
P10809_1058
10.0
P10809_1080
12.7
P10809_1107
14.6
Intermediate monocyte nTPM: 21.7
Samples: 6
Max nTPM: 30.7
Min nTPM: 16.4
P10809_1004
30.7
P10809_1023
22.6
P10809_1042
27.3
P10809_1061
16.4
P10809_1081
16.5
P10809_1108
16.4
Non-classical monocyte nTPM: 21.1
Samples: 5
Max nTPM: 36.1
Min nTPM: 13.6
P10809_1005
36.1
P10809_1053
21.9
P10809_1072
14.5
P10809_1082
13.6
P10809_1109
19.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.8
Monaco sample
nTPM
Classical monocyte nTPM: 86.9
Samples: 4
Max nTPM: 90.8
Min nTPM: 84.4
RHH5313_R3680
84.4
RHH5221_R3593
90.8
RHH5250_R3622
87.2
RHH5279_R3651
85.2
Intermediate monocyte nTPM: 113.0
Samples: 4
Max nTPM: 120.8
Min nTPM: 106.3
RHH5314_R3681
110.5
RHH5222_R3594
114.2
RHH5251_R3623
106.3
RHH5280_R3652
120.8
Non-classical monocyte nTPM: 113.8
Samples: 4
Max nTPM: 137.2
Min nTPM: 96.2
RHH5315_R3682
137.2
RHH5223_R3595
96.4
RHH5252_R3624
125.3
RHH5281_R3653
96.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.3
Schmiedel sample id
TPM
Classical monocyte TPM: 15.0
Samples: 91
Max TPM: 23.9
Min TPM: 6.9
MONOCYTES_1
23.9
MONOCYTES_2
23.5
MONOCYTES_3
22.0
MONOCYTES_4
21.7
MONOCYTES_5
21.2
MONOCYTES_6
21.0
MONOCYTES_7
20.2
MONOCYTES_8
20.2
MONOCYTES_9
20.2
MONOCYTES_10
20.0
MONOCYTES_11
19.9
MONOCYTES_12
19.9
MONOCYTES_13
19.8
MONOCYTES_14
19.7
MONOCYTES_15
19.7
MONOCYTES_16
19.7
MONOCYTES_17
19.6
MONOCYTES_18
19.1
MONOCYTES_19
18.9
MONOCYTES_20
18.8
MONOCYTES_21
18.4
MONOCYTES_22
18.3
MONOCYTES_23
18.3
MONOCYTES_24
18.3
MONOCYTES_25
17.5
MONOCYTES_26
17.3
MONOCYTES_27
17.1
MONOCYTES_28
17.0
MONOCYTES_29
16.9
MONOCYTES_30
16.9
MONOCYTES_31
16.9
MONOCYTES_32
16.9
MONOCYTES_33
16.9
MONOCYTES_34
16.6
MONOCYTES_35
16.5
MONOCYTES_36
16.3
MONOCYTES_37
16.3
MONOCYTES_38
16.2
MONOCYTES_39
16.1
MONOCYTES_40
15.9
MONOCYTES_41
15.8
MONOCYTES_42
15.5
MONOCYTES_43
15.5
MONOCYTES_44
15.3
MONOCYTES_45
15.2
MONOCYTES_46
15.1
MONOCYTES_47
15.1
MONOCYTES_48
14.8
MONOCYTES_49
14.7
MONOCYTES_50
14.6
MONOCYTES_51
14.4
MONOCYTES_52
14.2
MONOCYTES_53
14.1
MONOCYTES_54
13.9
MONOCYTES_55
13.6
MONOCYTES_56
13.6
MONOCYTES_57
13.4
MONOCYTES_58
13.3
MONOCYTES_59
13.3
MONOCYTES_60
13.1
MONOCYTES_61
13.1
MONOCYTES_62
13.0
MONOCYTES_63
12.9
MONOCYTES_64
12.8
MONOCYTES_65
12.4
MONOCYTES_66
12.1
MONOCYTES_67
12.1
MONOCYTES_68
12.0
MONOCYTES_69
12.0
MONOCYTES_70
11.7
MONOCYTES_71
11.5
MONOCYTES_72
11.3
MONOCYTES_73
11.1
MONOCYTES_74
11.0
MONOCYTES_75
11.0
MONOCYTES_76
10.9
MONOCYTES_77
10.8
MONOCYTES_78
10.2
MONOCYTES_79
10.1
MONOCYTES_80
10.0
MONOCYTES_81
9.6
MONOCYTES_82
9.3
MONOCYTES_83
9.1
MONOCYTES_84
8.4
MONOCYTES_85
8.4
MONOCYTES_86
8.2
MONOCYTES_87
8.2
MONOCYTES_88
8.0
MONOCYTES_89
7.5
MONOCYTES_90
7.2
MONOCYTES_91
6.9
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Non-classical monocyte TPM: 24.3
Samples: 90
Max TPM: 45.7
Min TPM: 7.5
M2_1
45.7
M2_2
43.4
M2_3
40.8
M2_4
39.8
M2_5
39.6
M2_6
38.8
M2_7
38.2
M2_8
37.6
M2_9
36.2
M2_10
35.1
M2_11
34.8
M2_12
33.5
M2_13
33.4
M2_14
33.3
M2_15
32.7
M2_16
32.6
M2_17
32.2
M2_18
31.8
M2_19
31.2
M2_20
31.2
M2_21
31.0
M2_22
30.6
M2_23
30.1
M2_24
30.0
M2_25
29.5
M2_26
29.5
M2_27
29.2
M2_28
29.1
M2_29
29.1
M2_30
28.9
M2_31
28.8
M2_32
28.7
M2_33
28.6
M2_34
28.6
M2_35
28.6
M2_36
28.1
M2_37
27.7
M2_38
26.8
M2_39
26.7
M2_40
26.7
M2_41
26.3
M2_42
26.1
M2_43
26.0
M2_44
24.6
M2_45
24.6
M2_46
24.3
M2_47
24.2
M2_48
24.1
M2_49
23.8
M2_50
23.7
M2_51
23.6
M2_52
23.0
M2_53
22.9
M2_54
22.9
M2_55
22.2
M2_56
22.1
M2_57
22.0
M2_58
21.0
M2_59
20.1
M2_60
20.0
M2_61
19.2
M2_62
19.0
M2_63
17.7
M2_64
17.4
M2_65
16.9
M2_66
16.6
M2_67
16.3
M2_68
16.2
M2_69
16.2
M2_70
16.0
M2_71
15.5
M2_72
15.1
M2_73
15.1
M2_74
14.9
M2_75
14.6
M2_76
14.1
M2_77
14.0
M2_78
13.5
M2_79
13.5
M2_80
12.9
M2_81
12.7
M2_82
11.9
M2_83
11.9
M2_84
11.1
M2_85
10.6
M2_86
10.4
M2_87
10.4
M2_88
8.1
M2_89
7.7
M2_90
7.5
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